Complete Coronavirus Genome Sequences

A list of naturally occurring coronaviruses for which a complete genome sequence is available

Genus Species Subspecies§ Isolate GenBank Accession host species host species Genome length year Country
Alphacoronavirus Alphacoronavirus 1‡ Canine coronavirus  Type I
Canine coronavirus strain Elmo/02 AY426983 dog Canis lupus familiaris 2145 bp ORF3, E and M Italy
Type II
Canine coronavirus strain NTU336/F/2008 GQ477367 dog Canis lupus familiaris 29363 2008 Taiwan
Feline coronavirus Type I
Feline coronavirus  C1Je DQ848678 domestic cat Felis catus 29277 -N/A- -N/A-
Feline coronavirus  Black EU186072 domestic cat Felis catus 29256 -N/A- USA
Feline coronavirus  RM FJ938051=NC_012937 domestic cat Felis catus 29232 2002 USA
Feline coronavirus  UU2 FJ938060=NC_012941 domestic cat Felis catus 29256 1993 USA
Feline coronavirus  UU3 FJ938061=NC_012942 domestic cat Felis catus 29130 1998 USA
Feline coronavirus  UU4 FJ938054=NC_012939 domestic cat Felis catus 29269 2007 Netherlands
Feline coronavirus  UU5 FJ938056=NC_012940 domestic cat Felis catus 29253 2007 Netherlands
Feline coronavirus  UU7 FJ938053=NC_012938 domestic cat Felis catus 29277 2007 Netherlands
Feline coronavirus  UU8 FJ938055=NC_012952 domestic cat Felis catus 29285 2007 Netherlands
Feline coronavirus  UU9 FJ938062=NC_012956 domestic cat Felis catus 29266 2007 Netherlands
Feline coronavirus  UU10 FJ938059=NC_012955 domestic cat Felis catus 29295 2007 Netherlands
Feline coronavirus  UU11 FJ938052=NC_012951 domestic cat Felis catus 29306 2007 Netherlands
Feline coronavirus  UU15 FJ938057=NC_012953 domestic cat Felis catus 29275 2007 Netherlands
Feline coronavirus  UU16 FJ938058=NC_012954 domestic cat Felis catus 28479 2007 Netherlands
Feline coronavirus  UU22 GU553361=NC_013794 domestic cat Felis catus 29264 2007 Netherlands
Feline coronavirus  UU23 GU553362=NC_013795 domestic cat Felis catus 29264 2007 Netherlands
Type II
Feline coronavirus WSU 79-1146 NC_007025=DQ010921 domestic cat Felis catus 29147 -N/A- USA
Feline coronavirus WSU 79-1146 AY994055 domestic cat Felis catus 29355 -N/A- USA
Feline coronavirus type II DF-2 DQ286389 domestic cat Felis catus 28632 -N/A- USA
Feline coronavirus NTU156/P/2007 GQ152141 domestic cat Felis catus 28897 2007 Taiwan
Porcine respiratory coronavirus Porcine respiratory coronavirus ISU-1 [DQ811787] domestic pig Sus scrofa 27550 -N/A- USA
Transmissible gastroenteritis virus Transmissible gastroenteritis virus SC-Y DQ443743 domestic pig Sus scrofa 28590 -N/A- China
Transmissible gastroenteritis virus Miller M6 DQ811785 domestic pig Sus scrofa 28542 -N/A- USA
Transmissible gastroenteritis virus virulent Purdue DQ811789 domestic pig Sus scrofa 28589 -N/A- USA
Transmissible gastroenteritis virus H16 FJ755618 domestic pig Sus scrofa 28569 1973 China
Transmissible gastroenteritis virus Purdue NC_002306=AJ271965 domestic pig Sus scrofa 28586 -N/A- USA
Human coronavirus 229E Human coronavirus 229E  [AF304460=NC_002645] Human Homo sapiens 27317 -N/A- -N/A-
Human coronavirus 229E CU110TH NC_002645 Human Homo sapiens 27317 -N/A- Thailand
Human coronavirus NL63 Human coronavirus NL63 Amsterdam 1 NC_005831=AY567487 Human Homo sapiens 27553 -N/A- Netherlands
Human coronavirus NL63 Amsterdam 057 DQ445911 Human Homo sapiens 27550 -N/A- Netherlands
Human coronavirus NL63 Amsterdam 496 DQ445912 Human Homo sapiens 27535 -N/A- Netherlands
Human Coronavirus NL AY518894 Human Homo sapiens 27555 1988 Netherlands
Porcine epidemic diarrhea virus Porcine epidemic diarrhea virus LZC EF185992 domestic pig Sus scrofa 28042 -N/A- China
Porcine epidemic diarrhea virus CV777 AF353511=NC_003436 domestic pig Sus scrofa 28033 -N/A- Belgium
Miniopterus bat coronavirus 1 Miniopterus bat coronavirus 1A  Miniopterus bat coronavirus 1A AFCD62 NC_010437=EU420138 Greater bent-winged  bat Miniopterus magnater 28326 -N/A- Hong Kong
Miniopterus bat coronavirus 1B  Miniopterus bat coronavirus 1B AFCD307 NC_010436=EU420137 Lesser bent-winged  bat Miniopterus pusillus 28476 -N/A- Hong Kong
Miniopterus bat coronavirus HKU8 Miniopterus bat coronavirus HKU8 AFCD77/08/05 Mm NC_010438=EU420139 Greater bent-winged  bat Miniopterus magnater 28773 -N/A- Hong Kong
Rhinolophus bat coronavirus HKU2 Rhinolophus bat coronavirus HKU2/HK/46/2006 EF203065 Chinese horseshoe bat Rhinolophus sinicus 27164 2006 Hong Kong
Rhinolophus bat coronavirus HKU2/HK/298/2006 EF203066 Chinese horseshoe bat Rhinolophus sinicus 27164 2006 Hong Kong
Rhinolophus bat coronavirus HKU2/HK/33/2006 EF203067 Chinese horseshoe bat Rhinolophus sinicus 27164 2006 Hong Kong
Rhinolophus bat coronavirus HKU2/GD/430/2006  NC_009988=EF203064 Chinese horseshoe bat Rhinolophus sinicus 27165 2006 Guangdong
Scotophilus bat coronavirus 512 Scotophilus bat coronavirus 512/2005 NC_009657=DQ648858 Lesser asiatic yellow bat Scotophilus kuhlii 28203 2005 Hainan
Betacoronavirus Betacoronavirus 1 Bovine Coronavirus Bovine coronavirus ENT NC_003045=AF391541 Cow Bos taurus 31028 -N/A- -N/A-
Bovine coronavirus LUN AF391542 Cow Bos taurus 31028 -N/A- -N/A-
Bovine coronavirus DB2 DQ811784 Cow Bos taurus 31023 -N/A- USA
Bovine coronavirus Kakegawa AB354579 Cow Bos taurus 31038 -N/A- Japan
**Bovine coronavirus Mebus U00735 Cow Bos taurus 31032 -N/A- -N/A-
Bovine coronavirus Quebec AF220295 Cow Bos taurus 31100 -N/A- -N/A-
Bovine coronavirus E-AH65 EF424615 Cow Bos taurus 31017 -N/A- USA
Bovine coronavirus R-AH65 EF424617 Cow Bos taurus 31016 -N/A- USA
Bovine coronavirus E-AH187 EF424619 Cow Bos taurus 30995 -N/A- USA
Bovine coronavirus R-AH187 EF424620 Cow Bos taurus 30964 -N/A- USA
Bovine respiratory coronavirus AH187 NC_012948=FJ938065 Cow Bos taurus 30969 2000 USA
Bovine coronavirus 4408  FJ415324 Human Homo sapiens 31029 1988 Germany
Bovine coronavirus 00-1381  DQ915164 Alpaca Vicugna pacos 31076 1998 USA
Bovine coronavirus  US/OH-WD358/1994  FJ425186 Waterbuck Kobus ellipsiprymnus 30962 1994 USA
Bovine coronavirus US/OH-WD470/1994  FJ425187 White-tailed deer Odocoileus virginianus 31020 1994 USA
Bovine coronavirus US/OH-WD388/1994  FJ425189 Sambar deer Cervus unicolor 30997 1994 USA
Bovine coronavirus US/OH1/2003 EF424621 Sable antelope Hippotragus niger 30995 2003 USA
Bovine coronavirus US/OH3/2003  EF424623 Giraffe Giraffa camelopardalis 31002 2003 USA
Bovine coronavirus US/OH3/2006 EF424624 Giraffe Giraffa camelopardalis 30979 2006 USA
Equine coronavirus Equine coronavirus NC99 NC_010327=EF446615 -N/A- -N/A- 30992 -N/A- -N/A-
Human Coronavirus OC43 Human coronavirus OC43 ATCC VR-759 NC_005147=AY391777 Human Homo sapiens 30738 -N/A- -N/A-
Human coronavirus OC43 ATCC VR-759 AY585228 Human Homo sapiens 30741 -N/A- USA
Human coronavirus OC43 87309 Belgium 2003 AY903459 Human Homo sapiens 30723 2003 Belgium
Human coronavirus OC43 19572 Belgium 2004 AY903460 Human Homo sapiens 30723 2004 Belgium
Human coronavirus OC43-Paris AY585229 Human Homo sapiens 30744 -N/A- France
Porcine hemagglutinating encephalomyelitis virus Porcine hemagglutinating encephalomyelitis virus VW572 NC_007732=DQ011855 domestic pig Sus scrofa 30480 -N/A- Belgium
Murine coronavirus‡ Mouse hepatitis virus Murine hepatitis virus 1 FJ647223 Mouse Mus musculus 31386 -N/A- USA
Murine hepatitis virus 2 AF201929 Mouse Mus musculus 31276 -N/A- -N/A-
Murine hepatitis virus 3 FJ647224 Mouse Mus musculus 31448 -N/A- USA
Murine hepatitis virus A59  AY700211 Mouse Mus musculus 31335 -N/A- USA
Murine hepatitis virus JHM NC_006852 Mouse Mus musculus 31526 -N/A- -N/A-
Murine hepatitis virus JHM.IA FJ647226 Mouse Mus musculus 31473 -N/A- USA
Rat coronavirus (Rat sialodacryoadenitis coronavirus)
Rat coronavirus Parker FJ938068=NC_012936 Rat Rattus norvegicus 31250 -N/A- -N/A-
Human Coronavirus HKU1 Human coronavirus HKU1 N2 AY884001 Human Homo sapiens 29815 2003 Hong Kong
Human coronavirus HKU1 N1 NC_006577=AY597011 Human Homo sapiens 29926 2004 Hong Kong
Human coronavirus HKU1 N3 DQ415903 Human Homo sapiens 29920 2003 Hong Kong
Human coronavirus HKU1 N5 DQ339101 Human Homo sapiens 29755 2004 Hong Kong
Human coronavirus HKU1 N6 DQ415904 Human Homo sapiens 29295 2004 Hong Kong
Human coronavirus HKU1 N7 DQ415905 Human Homo sapiens 29857 2004 Hong Kong
Human coronavirus HKU1 N9 DQ415906 Human Homo sapiens 29857 2004 Hong Kong
Human coronavirus HKU1 N10 DQ415907 Human Homo sapiens 29887 2004 Hong Kong
Human coronavirus HKU1 N11 DQ415908 Human Homo sapiens 29947 2004 Hong Kong
Human coronavirus HKU1 N13 DQ415909 Human Homo sapiens 29767 2004 Hong Kong
Human coronavirus HKU1 N14 DQ415910 Human Homo sapiens 29797 2004 Hong Kong
Human coronavirus HKU1 N15 DQ415911 Human Homo sapiens 29902 2004 Hong Kong
Human coronavirus HKU1 N16 DQ415912 Human Homo sapiens 29845 2004 Hong Kong
Human coronavirus HKU1 N17 DQ415913 Human Homo sapiens 29785 2004 Hong Kong
Human coronavirus HKU1 N18 DQ415914 Human Homo sapiens 29887 2004 Hong Kong
Human coronavirus HKU1 N19 DQ415896 Human Homo sapiens 29860 2004 Hong Kong
Human coronavirus HKU1 N20 DQ415897 Human Homo sapiens 29845 2004 Hong Kong
Human coronavirus HKU1 N21 DQ415898 Human Homo sapiens 29815 2004 Hong Kong
Human coronavirus HKU1 N22 DQ415899 Human Homo sapiens 29905 2005 Hong Kong
Human coronavirus HKU1 N23 DQ415900 Human Homo sapiens 29812 2005 Hong Kong
Human coronavirus HKU1 N24 DQ415901 Human Homo sapiens 30097 2005 Hong Kong
Human coronavirus HKU1 N25 DQ415902 Human Homo sapiens 29845 2005 Hong Kong
Severe acute respiratory syndrome-related Coronavirus SARS-related Rhinolophus bat  coronavirus RF1 SARS-related Rhinolophus bat  coronavirus Rf1/2004 NC_009695=DQ412042 Greater horseshoe bat Rhinolophus ferrumequinum 29709 -N/A- -N/A-
SARS-related Rhinolophus bat  coronavirus Rf1/273/2005 DQ648856 Greater horseshoe bat Rhinolophus ferrumequinum 29704 -N/A- China
SARS-related Rhinolophus bat  coronavirus Rm1 SARS-related Rhinolophus bat  coronavirus Rm1/2004 NC_009696=DQ412043 Big-eared horseshoe bat Rhinolophus macrotis 29749 -N/A- -N/A-
SARS-related Rhinolophus bat  coronavirus Rm1/279/2005 DQ648857 Big-eared horseshoe bat Rhinolophus macrotis 29741 2005 China
SARS-related Rhinolophus bat  coronavirus Rp3 SARS-related Rhinolophus bat  coronavirus Rp3/2004 NC_009693 Pearson's horseshoe bat Rhinolophus pearsoni 29736 2004 China
SARS-related Rhinolophus bat  coronavirus HKU3 SARS-related Rhinolophus bat  coronavirus HKU3-1 NC_009694=DQ022305 Chinese horseshoe bat Rhinolophus sinicus 29728 -N/A- China
SARS-related Rhinolophus bat  coronavirus HKU3-2 DQ084199 Chinese horseshoe bat Rhinolophus sinicus 29687 -N/A- -N/A-
SARS-related Rhinolophus bat  coronavirus HKU3-3 DQ084200 Chinese horseshoe bat Rhinolophus sinicus 29711 -N/A- -N/A-
SARS-related Rhinolophus bat  coronavirus HKU3-4 GQ153539 Chinese horseshoe bat Rhinolophus sinicus 29704 2005 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-5 GQ153540 Chinese horseshoe bat Rhinolophus sinicus 29704 2005 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-6 GQ153541 Chinese horseshoe bat Rhinolophus sinicus 29704 2005 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-7 GQ153542 Chinese horseshoe bat Rhinolophus sinicus 29716 2006 China
SARS-related Rhinolophus bat  coronavirus HKU3-8 GQ153543 Chinese horseshoe bat Rhinolophus sinicus 29681 2006 China
SARS-related Rhinolophus bat  coronavirus HKU3-9 GQ153544 Chinese horseshoe bat Rhinolophus sinicus 29695 2006 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-10 GQ153545 Chinese horseshoe bat Rhinolophus sinicus 29695 2006 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-11 GQ153546 Chinese horseshoe bat Rhinolophus sinicus 29695 2007 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-12 GQ153547 Chinese horseshoe bat Rhinolophus sinicus 29704 2007 Hong Kong
SARS-related Rhinolophus bat  coronavirus HKU3-13 GQ153548 Chinese horseshoe bat Rhinolophus sinicus 29677 2007 Hong Kong
SARS-related Rhinolophus bat  coronavirus Rs SARS-related Rhinolophus bat  coronavirus Rs_672/2006 NC_013664=FJ588686 Chinese horseshoe bat Rhinolophus sinicus 29059 2006 China
SARS-related palm civet coronavirus
SARS-related palm civet coronavirus A001 FJ959407 Himalayan palm civet Paguma larvata  29694 -N/A- China
SARS-related palm civet coronavirus A022 AY686863 Himalayan palm civet Paguma larvata  29499 -N/A- China
SARS-related palm civet coronavirus B039 AY686864 Himalayan palm civet Paguma larvata  29525 -N/A- China
SARS-related palm civet coronavirus civet007 AY572034 Himalayan palm civet Paguma larvata  29540 2004 China
SARS-related palm civet coronavirus civet010 AY572035 Himalayan palm civet Paguma larvata  29518 -N/A- China
SARS-related palm civet coronavirus civet020 AY572038 Himalayan palm civet Paguma larvata  29683 -N/A- China
SARS-related palm civet coronavirus HC/SZ/61/03 AY515512 Himalayan palm civet Paguma larvata  29731 2003 China
SARS-related palm civet coronavirus HC/SZ/79/03 AY545914 Himalayan palm civet Paguma larvata  29723 2003 China
SARS-related palm civet coronavirus HC/SZ/DM1/03 AY545915 Himalayan palm civet Paguma larvata  29714 2003 China
SARS-related palm civet coronavirus HC/SZ/266/03 AY545916 Himalayan palm civet Paguma larvata  29721 2003 China
SARS-related palm civet coronavirus HC/GZ/81/03 AY545917 Himalayan palm civet Paguma larvata  29739 2003 China
SARS-related palm civet coronavirus HC/GZ/32/03 AY545918 Himalayan palm civet Paguma larvata  29737 2003 China
SARS-related palm civet coronavirus PC4-13 AY613948 Himalayan palm civet Paguma larvata  29730 -N/A- China
SARS-related palm civet coronavirus PC4-136 AY613949 Himalayan palm civet Paguma larvata  29730 -N/A- China
SARS-related palm civet coronavirus PC4-227 AY613950 Himalayan palm civet Paguma larvata  29728 -N/A- China
SARS-related palm civet coronavirus SZ3/2003 AY304486 Himalayan palm civet Paguma larvata  29741 2003 Hong Kong
SARS-related palm civet coronavirus SZ16/2003 AY304488 Himalayan palm civet Paguma larvata  29731 2003 Hong Kong
SARS-related chinese ferret badger coronavirus
SARS-related chinese ferret badger coronavirus CFB/SZ/94/03 AY545919 Chinese ferret badger Melogale moschata 29739 -N/A- China
SARS-related human coronavirus SARS-related human coronavirus AS AY427439 Human Homo sapiens 29711 2003 -N/A-
SARS-related human coronavirus BJ01 AY278488 Human Homo sapiens 29725 -N/A- China
SARS-related human coronavirus BJ02 AY278487 Human Homo sapiens 29745 -N/A- -N/A-
SARS-related human coronavirus BJ03 AY278490 Human Homo sapiens 29740 -N/A- -N/A-
SARS-related human coronavirus BJ04 AY279354 Human Homo sapiens 29732 -N/A- -N/A-
SARS-related human coronavirus BJ162 AY864805 Human Homo sapiens 29751 -N/A- China
SARS-related human coronavirus BJ202 AY864806 Human Homo sapiens 29751 -N/A- -N/A-
SARS-related human coronavirus BJ182a EU371560 Human Homo sapiens 29731 -N/A- -N/A-
SARS-related human coronavirus BJ182b EU371561 Human Homo sapiens 29602 -N/A- -N/A-
SARS-related human coronavirus BJ182-4 EU371562 Human Homo sapiens 29602 -N/A- -N/A-
SARS-related human coronavirus BJ182-8 EU371563 Human Homo sapiens 29602 -N/A- -N/A-
SARS-related human coronavirus BJ182-12 EU371564 Human Homo sapiens 29512 -N/A- -N/A-
SARS-related human coronavirus CDC#200301157 AY714217 Human Homo sapiens 29727 -N/A- USA
SARS-related human coronavirus CUHK-AG01 AY345986 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus CUHK-AG02 AY345987 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus CUHK-AG03 AY345988 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus CUHK-Su10 AY282752 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus CUHK-W1 AY278554 Human Homo sapiens 29736 -N/A- Hong Kong
SARS-related human coronavirus CV7 DQ898174 Human Homo sapiens 29751 -N/A- Canada
SARS-related human coronavirus FRA AY310120 Human Homo sapiens 29740 -N/A- -N/A-
SARS-related human coronavirus Frankfurt 1 AB257344 Human Homo sapiens 29632 -N/A- -N/A-
SARS-related human coronavirus Frankfurt 1 AY291315 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus GD01 AY278489 Human Homo sapiens 29757 -N/A- -N/A-
SARS-related human coronavirus GD69 AY313906 Human Homo sapiens 29754 2003 China
SARS-related human coronavirus GDH-BJH01 DQ640652 Human Homo sapiens 29746 -N/A- China
SARS-related human coronavirus GZ-A AY394977 Human Homo sapiens 29433 -N/A- -N/A-
SARS-related human coronavirus GZ-B AY394978 Human Homo sapiens 29640 -N/A- -N/A-
SARS-related human coronavirus GZ-C AY394979 Human Homo sapiens 29645 -N/A- -N/A-
SARS-related human coronavirus GZ-D AY394980 Human Homo sapiens 29705 -N/A- -N/A-
SARS-related human coronavirus GZ02 AY390556 Human Homo sapiens 29760 -N/A- China
SARS-related human coronavirus GZ0401 AY568539 Human Homo sapiens 29730 2003 China
SARS-related human coronavirus GZ0402 AY613947 Human Homo sapiens 29730 -N/A- China
SARS-related human coronavirus GZ50 AY304495 Human Homo sapiens 29720 -N/A- Hong Kong
SARS-related human coronavirus HGZ8L1-A AY394981 Human Homo sapiens 29726 -N/A- -N/A-
SARS-related human coronavirus HGZ8L1-B AY394982 Human Homo sapiens 29646 -N/A- -N/A-
SARS-related human coronavirus HGZ8L2 AY394993 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus HKU-39849 AY278491 Human Homo sapiens 29742 -N/A- -N/A-
SARS-related human coronavirus HSR 1 AY323977 Human Homo sapiens 29751 -N/A- Italy
SARS-related human coronavirus HSZ-A AY394984 Human Homo sapiens 29733 -N/A- -N/A-
SARS-related human coronavirus HSZ-Bb AY394985 Human Homo sapiens 29530 -N/A- -N/A-
SARS-related human coronavirus HSZ-Bc AY394994 Human Homo sapiens 29765 -N/A- -N/A-
SARS-related human coronavirus HSZ-Cb AY394986 Human Homo sapiens 29729 -N/A- -N/A-
SARS-related human coronavirus HSZ-Cc AY394995 Human Homo sapiens 29765 -N/A- -N/A-
SARS-related human coronavirus HSZ2-A AY394983 Human Homo sapiens 29699 -N/A- -N/A-
SARS-related human coronavirus HZS2-Bb AY395004 Human Homo sapiens 29620 -N/A- -N/A-
SARS-related human coronavirus HZS2-C AY394992 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus HZS2-D AY394989 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus HZS2-E AY394990 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus HZS2-Fb AY394987 Human Homo sapiens 29709 -N/A- -N/A-
SARS-related human coronavirus HZS2-Fc AY394991 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus JMD AY394988 Human Homo sapiens 29665 -N/A- -N/A-
SARS-related human coronavirus LC1 AY394998 Human Homo sapiens 29736 -N/A- -N/A-
SARS-related human coronavirus LC2 AY394999 Human Homo sapiens 29350 -N/A- -N/A-
SARS-related human coronavirus LC3 AY395000 Human Homo sapiens 29350 -N/A- -N/A-
SARS-related human coronavirus LC4 AY395001 Human Homo sapiens 29350 -N/A- -N/A-
SARS-related human coronavirus LC5 AY395002 Human Homo sapiens 29350 -N/A- -N/A-
SARS-related human coronavirus LLJ-2004 AY595412 Human Homo sapiens 29716 -N/A- -N/A-
SARS-related human coronavirus NS-1 AY508724 Human Homo sapiens 29732 -N/A- -N/A-
SARS-related human coronavirus P2 FJ882963 Human Homo sapiens 29682 2004 USA
SARS-related human coronavirus PUMC01 AY350750 Human Homo sapiens 29738 -N/A- -N/A-
SARS-related human coronavirus PUMC02 AY357075 Human Homo sapiens 29738 -N/A- -N/A-
SARS-related human coronavirus PUMC03 AY357076 Human Homo sapiens 29745 -N/A- -N/A-
SARS-related human coronavirus Tor2 NC_004718=AY274119 Human Homo sapiens 29751 -N/A- Canada
SARS-related human coronavirus SIN842 AY559081 Human Homo sapiens 29716 -N/A- Singapore
SARS-related human coronavirus SIN845 AY559093 Human Homo sapiens 29712 -N/A- Singapore
SARS-related human coronavirus SIN846 AY559094 Human Homo sapiens 29577 -N/A- Singapore
SARS-related human coronavirus SIN847 AY559095 Human Homo sapiens 29719 -N/A- Singapore
SARS-related human coronavirus SIN848 AY559085 Human Homo sapiens 29713 -N/A- Singapore
SARS-related human coronavirus SIN849 AY559086 Human Homo sapiens 29661 -N/A- Singapore
SARS-related human coronavirus SIN850 AY559096 Human Homo sapiens 29720 -N/A- Singapore
SARS-related human coronavirus SIN852 AY559082 Human Homo sapiens 29670 -N/A- Singapore
SARS-related human coronavirus SIN2500 AY283794 Human Homo sapiens 29711 -N/A- Singapore
SARS-related human coronavirus SIN2677 AY283795 Human Homo sapiens 29705 -N/A- Singapore
SARS-related human coronavirus SIN2679 AY283796 Human Homo sapiens 29711 -N/A- Singapore
SARS-related human coronavirusSIN2748 AY283797 Human Homo sapiens 29706 -N/A- Singapore
SARS-related human coronavirus SIN2774 AY283798 Human Homo sapiens 29711 -N/A- Singapore
SARS-related human coronavirus SIN3408 AY559083 Human Homo sapiens 29767 -N/A- Singapore
SARS-related human coronavirus SIN3408L AY559097 Human Homo sapiens 29715 -N/A- Singapore
SARS-related human coronavirus SIN3725V AY559087 Human Homo sapiens 29716 -N/A- Singapore
SARS-related human coronavirus SIN3765V AY559084 Human Homo sapiens 29722 -N/A- Singapore
SARS-related human coronavirus SINP1 AY559088 Human Homo sapiens 29714 -N/A- Singapore
SARS-related human coronavirus SINP2 AY559089 Human Homo sapiens 29717 -N/A- Singapore
SARS-related human coronavirus SINP3 AY559090 Human Homo sapiens 29725 -N/A- Singapore
SARS-related human coronavirus SINP4 AY559091 Human Homo sapiens 29710 -N/A- Singapore
SARS-related human coronavirus SINP5 AY559092 Human Homo sapiens 29713 -N/A- Singapore
SARS-related human coronavirus ShanghaiQXC1 AY463059 Human Homo sapiens 29592 -N/A- China
SARS-related human coronavirus ShanghaiQXC2 AY463060 Human Homo sapiens 29013 -N/A- China
SARS-related human coronavirus Sino1-11 AY485277 Human Homo sapiens 29741 -N/A- -N/A-
SARS-related human coronavirus Sino3-11 AY485278 Human Homo sapiens 29740 -N/A- -N/A-
SARS-related human coronavirus SoD AY461660 Human Homo sapiens 29715 -N/A- Russia
SARS-related human coronavirus TC1 AY338174 Human Homo sapiens 29573 -N/A- Taiwan
SARS-related human coronavirus TC2 AY338175 Human Homo sapiens 29573 -N/A- Taiwan
SARS-related human coronavirus TC3 AY348314 Human Homo sapiens 29573 -N/A- Taiwan
SARS-related human coronavirus TJF AY654624 Human Homo sapiens 29745 -N/A- -N/A-
SARS-related human coronavirus TW1 AY291451 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW2 AY502925 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW3 AY502926 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW4 AY502927 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW5 AY502928 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW6 AY502929 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW7 AY502930 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW8 AY502931 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW9 AY502932 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW10 AY502923 Human Homo sapiens 29729 -N/A- Taiwan
SARS-related human coronavirus TW11 AY502924 Human Homo sapiens 29727 -N/A- Taiwan
SARS-related human coronavirus TWC AY321118 Human Homo sapiens 29725 -N/A- -N/A-
SARS-related human coronavirus TWC2 AY362698 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus TWC3 AY362699 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus TWH AP006557 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus TWJ AP006558 Human Homo sapiens 29725 -N/A- -N/A-
SARS-related human coronavirus TWK AP006559 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus TWS AP006560 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus TWY AP006561 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus WHU AY394850 Human Homo sapiens 29728 -N/A- -N/A-
SARS-related human coronavirus Urbani AY278741 Human Homo sapiens 29727 -N/A- -N/A-
SARS-related human coronavirus WH20 AY772062 Human Homo sapiens 29461 -N/A- -N/A-
SARS-related human coronavirus ZJ01b AY286320 Human Homo sapiens 26333 -N/A- China
SARS-related human coronavirus ZJ02 EU371559 Human Homo sapiens 29731 -N/A- -N/A-
SARS-related human coronavirus ZJ0301 DQ182595 Human Homo sapiens 29706 2003 China
SARS-related human coronavirus ZJ01 AY297028 Human Homo sapiens 29715 -N/A- -N/A-
SARS-related human coronavirus ZMY 1 AY351680 Human Homo sapiens 29749 -N/A- -N/A-
SARS-related human coronavirus ZS-A AY394997 Human Homo sapiens 29683 -N/A- -N/A-
SARS-related human coronavirus ZS-B AY394996 Human Homo sapiens 29683 -N/A- -N/A-
SARS-related human coronavirus ZS-C AY395003 Human Homo sapiens 29647 -N/A- -N/A-
Rousettus bat coronavirus HKU9 Rousettus bat coronavirus HKU9-1 BF_005I NC_009021=EF065513 Leschenault's rousette Rousettus leschenaultii 29114 2005 China
Rousettus bat coronavirus HKU9-2 BF_017I EF065514 Leschenault's rousette Rousettus leschenaultii 29107 2005 China
Rousettus bat coronavirus HKU9-3 BF_493I EF065515 Leschenault's rousette Rousettus leschenaultii 29136 2006 China
Rousettus bat coronavirus HKU9-4 BF_141I EF065516 Leschenault's rousette Rousettus leschenaultii 29155 2005 China
Tylonycteris bat coronavirus HKU4  Tylonycteris bat coronavirus HKU4-1 B04f NC_009019=EF065505 Lesser bamboo bat Tylonycteris pachypus 30286 2005 Hong Kong
Tylonycteris Bat coronavirus HKU4-2 B05f EF065506 Lesser bamboo bat Tylonycteris pachypus 30286 2005 Hong Kong
Tylonycteris Bat coronavirus HKU4-3 B07f EF065507 Lesser bamboo bat Tylonycteris pachypus 30286 2005 Hong Kong
Tylonycteris Bat coronavirus HKU4-4 LMH1f EF065508 Lesser bamboo bat Tylonycteris pachypus 30316 2005 Hong Kong
Bat coronavirus Tp/GD/133/2005 NC_008315=DQ648794 Lesser bamboo bat Tylonycteris pachypus 30307 2005 China
Pipistrellus bat coronavirus HKU5 Pipistrellus bat coronavirus HKU5-2 TT03f EF065510 Japanese pipistrelle Pipistrellus abramus 30488 2005 Hong Kong
Pipistrellus bat coronavirus HKU5-3 TT06f EF065511 Japanese pipistrelle Pipistrellus abramus 30488 2005 Hong Kong
Pipistrellus bat coronavirus HKU5-5 TT07f EF065512 Japanese pipistrelle Pipistrellus abramus 30487 2005 Hong Kong
Pipistrellus bat coronavirus HKU5-1 LMH03f NC_009020=EF065509 Japanese pipistrelle Pipistrellus abramus 30482 2005 Hong Kong
Gammacoronavirus Avian Coronavirus‡ Infectious bronchitis virus Infectious bronchitis virus  A2 EU526388 Chicken Gallus gallus 27715 -N/A- China
Infectious bronchitis virus ArkDPI11 EU418976 Chicken Gallus gallus 27636 -N/A- -N/A-
Infectious bronchitis virus Cal99 AY514485 Chicken Gallus gallus 27693 -N/A- USA
Infectious bronchitis virus CK/CH/LSD/05I EU637854 Chicken Gallus gallus 27638 -N/A- China
Infectious bronchitis virus Beaudette NC_001451=M95169 Chicken Gallus gallus 27608 -N/A- USA
Infectious bronchitis virus Beaudette CK AJ311317 Chicken Gallus gallus 27635 -N/A- -N/A-
Infectious bronchitis virus Beaudette AY692454 Chicken Gallus gallus 27613 -N/A- -N/A-
Infectious bronchitis virus BJ AY319651 Chicken Gallus gallus 27733 -N/A- -N/A-
**Infectious bronchitis viruss H52 EU817497 Chicken Gallus gallus 27646 -N/A- China
**Infectious bronchitis virus H120 FJ807652 Chicken Gallus gallus 27631 -N/A- Netherlands
**Infectious bronchitis virus H120 FJ888351 Chicken Gallus gallus 27652 1960 Netherlands
Infectious bronchitis virus ITA/90254/2005 FN430414 Chicken Gallus gallus 27643 2005 Italy
Infectious bronchitis virus LX4 AY338732 Chicken Gallus gallus 27528 -N/A- China
Infectious bronchitis virus Mass 41 AY851295 Chicken Gallus gallus 27475 -N/A- USA
Infectious bronchitis virus Mass 41 DQ834384 Chicken Gallus gallus 27476 -N/A- USA
Infectious bronchitis virus NGA/A116E7/2006 FN430415 Chicken Gallus gallus 27593 2006 Nigeria
Infectious bronchitis virus SAIBK DQ288927 Chicken Gallus gallus 27534 -N/A- -N/A-
Infectious bronchitis virus SC021202 EU714029 Chicken Gallus gallus 27660 2002 China
Infectious bronchitis virus ZJ971 EU714028 Chicken Gallus gallus 27640 1997 China
Infectious bronchitis virus Partridge/GD/S14/2003 AY646283 Partridge -N/A- 27503 2003 China
Infectious bronchitis virus Peafowl/GD/KQ6/2003 AY641576 Peafowl Pavo cristatus 27434 2003 China
Turkey Coronavirus Turkey coronavirus ATCC EU022526 Turkey Meleagris gallopavo 27854 -N/A- USA
Turkey coronavirus MG10 NC_010800=EU095850 Turkey Meleagris gallopavo 27657 -N/A- Canada
Turkey coronavirus 540 EU022525 Turkey Meleagris gallopavo 27771 -N/A- USA
Beluga Whale coronavirus SW1 Beluga Whale coronavirus SW1 NC_010646 Beluga whale Delphinapterus leucas 31686 -N/A- -N/A-
Deltacoronavirus (proposed) Bulbul Coronavirus Bulbul coronavirus HKU11-934 FJ376619 Red-whiskered bulbul Pycnonotus jocosus 26487 2007 Hong Kong
Bulbul coronavirus HKU11-796 FJ376620 Chinese bulbul Pycnonotus sinensis 26476 2007 Hong Kong
Munia Coronavirus Munia coronavirus HKU13-3514 NC_011550=FJ376622 White-rumped munia Lonchura striata 26552 2007 Hong Kong
Thrush Coronavirus Thrush coronavirus HKU12-600 NC_011549=FJ376621 Grey-backed thrush Turdus hortulorum 26396 2007 Hong Kong

Footnotes:

§ ‘Subspecies’, meaning a well-known strain, is not an officially recognized level in virus taxonomy. Subspecies are shown in roman type.

‡ indicates type species

** indicates vaccine strain

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