Brief notes of the meeting of the ICTV Executive Committee (EC) and Study Group (SG) chairs held on 1-2 February 2016 at Hinxton Hall, Wellcome Trust Genome Campus, Cambridgeshire, UK
This meeting was the first ever to bring together the EC and SG chairs to discuss current issues in virus taxonomy, and was a very appropriate start to the year in which ICTV celebrates its 50th anniversary. The excellent conference facilities provided by the Wellcome Trust Genome Campus enhanced the success of the meeting.
As explained by Andrew Davison (ICTV President) and Peter Simmonds (meeting organiser), the meeting was funded as part of a 5-year Wellcome Trust grant that is helping to develop ICTV resources, in particular by initiating an open-access online version of the ICTV Report. The meeting provided the opportunity to explain and discuss how the working of ICTV can be improved and how the Report can be developed. Some sessions addressed various problems that virus classification is facing, and added interest came from plenary sessions from a range of external speakers.
Many of the Powerpoint presentations are available for downloading from the website.
Monday 1 February
In the introductory plenary lecture, Paul Kellam from the Wellcome Trust Sanger Centre illustrated how next-generation sequencing is transforming viral epidemiology and clinical studies.
This was followed by a series of short presentations from EC members outlining the history of ICTV taxonomy, the current procedures for maintaining and updating ICTV taxonomy, and the ways in which this is made available to the scientific community.
George Garrity from Michigan State University then gave a plenary lecture on bacterial classification that provided insights into the management of nomenclature and taxonomy in a different biological arena.
A further series of short presentations from EC members then focused on plans for developing the ICTV Report into an online open-access resource, using an example chapter. Most chapters would correspond to a family, and it was planned to publish citeable 2-page summaries as open access articles in an appropriate journal as the online chapters become available. The summaries would provide authors with a publication indexed in PubMed. It is hoped to have 30 chapters prepared by the end of 2016.
After lunch, there was a wide-ranging open session in which SG chairs were invited to raise issues related to the ICTV. The key points noted for action from this session and other discussions during the meeting are listed at the end of these notes.
The formal business of the day ended with a plenary lecture from Chris Stringer of the London Natural History Museum on hominid evolution. This raised issues of classification in palaeontology and proved to be of great general interest.
Tuesday 2 February
The day began with a plenary lecture in which Guy Cochrane of the European Nucleotide Archive explained the challenge posed by vast quantities of NGS data that need to be captured and made available in appropriate ways to the scientific community.
The next session concentrated on sequence-related issues, including bioinformatics tools for sequence analysis in taxonomy, and served as a preview for dedicated meeting(s) on these topics to be held in the future. It included presentations from two EC members and two researchers employed through the grant. Overviews of multiple sequence alignments and phylogenetic trees were presented. SG chairs were encouraged to co-operate in providing standard sequence alignments appropriate for use in classifying viruses in their remit and in publishing criteria used to discriminate between species (and other taxa). Bioinformatics tools to assist users in examining the taxonomic implications of virus sequence data were presented, including one which has been extensively validated and used for taxonomy development in two virus families. Where appropriate, SGs could make use of linked wikipages to provide related information that is not appropriate to the main Report chapters and may change more frequently. These could include, for example, genotype and strain classifications below the species level or lists of viruses or sequences not yet formally classified.
Two sessions were devoted to selected issues raised in advance by SG chairs. Key points arising from these discussions are included in the list at the end of these notes.
The plenary lecture after lunch was given by Curtis Suttle from the University of British Columbia, who demonstrated the vast diversity of viruses in the ocean. As well as being a fascinating story, this helped to highlight the challenge that virus taxonomy faces from the discovery of so many potential new taxa.
The final session attempted to look forward. Andrew Davison (President) summarised the current position of the ICTV about classifying viruses based on sequence data alone. This continues to be one of the major issues faced and will be the subject of a specialist meeting of invited experts and EC members in June 2016 in Boston. It is hoped that this meeting will result in a publication and recommendations to inform future ICTV policy. Andrew King (Proposals Secretary) recognised the importance of simplifying and accelerating the proposal process, especially for new species in well-established genera. Mike Adams (Business Secretary) discussed some of the advantages and disadvantages of adopting a latinized binomial nomenclature as used in other branches of biology and envisaged by the founders of ICTV 50 years ago. Elliot Lefkowitz (Data Secretary) outlined the provision of high quality taxonomic information and associated tools that the new online Report will be able to provide, together with links to other biological and sequence databases.
Key issues noted