References: Redondoviridae

References: Redondoviridae

Abbas, A. A., J. M. Diamond, C. Chehoud, B. Chang, J. J. Kotzin, J. C. Young, I. Imai, A. R. Haas, E. Cantu, D. J. Lederer, K. C. Meyer, R. K. Milewski, K. M. Olthoff, A. Shaked, J. D. Christie, F. D. Bushman and R. G. Collman (2017). The perioperative lung transplant virome: torque teno viruses are elevated in donor lungs and show divergent dynamics in primary graft dysfunction. Am J Transplant 17: 1313-1324. [PubMed]

Abbas, A. A., L. J. Taylor, M. I. Dothard, J. S. Leiby, A. S. Fitzgerald, L. A. Khatib, R. G. Collman and F. D. Bushman (2019a). Redondoviridae, a family of small, circular DNA viruses of the human oro-respiratory tract associated with periodontitis and critical illness. Cell Host Microbe 25: 719-729. [PubMed]

Abbas, A. A., J. C. Young, E. L. Clarke, J. M. Diamond, I. Imai, A. R. Haas, E. Cantu, D. J. Lederer, K. Meyer, R. K. Milewski, K. M. Olthoff, A. Shaked, J. D. Christie, F. D. Bushman and R. G. Collman (2019b). Bidirectional transfer of Anelloviridae lineages between graft and host during lung transplantation. Am J Transplant 19: 1086-1097. [PubMed]

Califf, K. J., K. Schwarzberg-Lipson, N. Garg, S. M. Gibbons, J. G. Caporaso, J. Slots, C. Cohen, P. C. Dorrestein and S. T. Kelley (2017). Multi-omics analysis of periodontal pocket microbial communities pre- and posttreatment. mSystems 2: e:00016-17. [PubMed]

Cheung, A. K., T. F. Ng, K. M. Lager, D. P. Alt, E. L. Delwart and R. M. Pogranichniy (2014). Identification of a novel single-stranded circular DNA virus in pig feces. Genome Announc 2: e00347-14. [PubMed

Clarke, E. L., A. P. Lauder, C. E. Hofstaedter, Y. Hwang, A. S. Fitzgerald, I. Imai, W. Biernat, B. Rękawiecki, H. Majewska, A. Dubaniewicz, L. A. Litzky, M. D. Feldman, K. Bittinger, M. D. Rossman, K. C. Patterson, F. D. Bushman and R. G. Collman (2018). Microbial lineages in sarcoidosis. A metagenomic analysis tailored for low-microbial content samples. Am J Respir Crit Care Med 197: 225-234. [PubMed

Cui, L., B. Wu, X. Zhu, X. Guo, Y. Ge, K. Zhao, X. Qi, Z. Shi, F. Zhu, L. Sun and M. Zhou (2017). Identification and genetic characterization of a novel circular single-stranded DNA virus in a human upper respiratory tract sample. Arch Virol 162: 3305-3312. [PubMed]

Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-7. [PubMed]

Faurez, F., D. Dory, B. Grasland and A. Jestin (2009). Replication of porcine circoviruses. Virol Journal 6: 60. [PubMed]

Gorbalenya, A. E., E. V. Koonin and Y. I. Wolf (1990). A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Lett 262: 145-8. [PubMed]

Guindon, S., J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk and O. Gascuel (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-21. [PubMed

Ilyina, T. V. and E. V. Koonin (1992). Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20: 3279-85. [PubMed]

Kelley, L. A., S. Mezulis, C. M. Yates, M. N. Wass and M. J. Sternberg (2015). The Phyre2 web portal for protein modeling, prediction and analysis. Nature protocols 10: 845-58. [PubMed]

Koonin, E. V., V. V. Dolja, M. Krupovic, A. Varsani, Y. I. Wolf, N. Yutin, F. M. Zerbini and J. H. Kuhn (2020). Global organization and proposed megataxonomy of the virus world. Microbiol Mol Biol Rev 84: e00061-19. [PubMed]

Kraberger, S., C. N. Cook, K. Schmidlin, R. S. Fontenele, J. Bautista, B. Smith and A. Varsani (2019). Diverse single-stranded DNA viruses associated with honey bees (Apis mellifera). Infect Genet Evol 71: 179-188. [PubMed

Lázaro-Perona, F., E. Dahdouh, S. Román-Soto, S. Jiménez-Rodríguez, C. Rodríguez-Antolín, F. de la Calle, A. Agrifoglio, F. J. Membrillo, J. García-Rodríguez and J. Mingorance (2020). Metagenomic detection of two vientoviruses in a human sputum sample. Viruses 12: 327. [PubMed]

Mankertz, A., F. Persson, J. Mankertz, G. Blaess and H. J. Buhk (1997). Mapping and characterization of the origin of DNA replication of porcine circovirus. J Virol 71: 2562-6. [PubMed]

Rosario, K., S. Duffy and M. Breitbart (2012). A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics. Arch Virol 157: 1851-71. [PubMed

Shi, B., M. Chang, J. Martin, M. Mitreva, R. Lux, P. Klokkevold, E. Sodergren, G. M. Weinstock, S. K. Haake and H. Li (2015). Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis. MBio 6: e01926-14. [PubMed]