References: Circoviridae


References: Circoviridae

Allan, G. M. & Ellis, J. A. (2000). Porcine circoviruses: a review. Journal of Veterinary Diagnostic Investigation 12, 3-14. [PubMed]

Baekbo, P., Kristensen, C. S. & Larsen, L. E. (2012). Porcine circovirus diseases: a review of PMWS. Transbound Emerg Dis 59 Suppl 1, 60-67. [PubMed]

Cheung, A. K. (2003). The essential and nonessential transcription units for viral protein synthesis and DNA replication of porcine circovirus type 2. Virology 313, 452-459. [PubMed]

Cheung, A. K. (2004a). Identification of an octanucleotide motif sequence essential for viral protein, DNA, and progeny virus biosynthesis at the origin of DNA replication of porcine circovirus type 2. Virology 324, 28-36. [PubMed]

Cheung, A. K. (2004b). Identification of the essential and non-essential transcription units for protein synthesis, DNA replication and infectious virus production of Porcine circovirus type 1. Arch Virol 149, 975-988. [PubMed]

Cheung, A. K. (2006). Rolling-circle replication of an animal circovirus genome in a theta-replicating bacterial plasmid in Escherichia coli. J Virol 80, 8686-8694. [PubMed]

Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E. (2004). WebLogo: a sequence logo generator. Genome Res 14, 1188-1190. [PubMed]

Crowther, R. A., Berriman, J. A., Curran, W. L., Allan, G. M. & Todd, D. (2003). Comparison of the structures of three circoviruses: chicken anemia virus, porcine circovirus type 2, and beak and feather disease virus. J Virol 77, 13036-13041. [PubMed]

Dayaram, A., Potter, K. A., Moline, A. B., Rosenstein, D. D., Marinov, M., Thomas, J. E., Breitbart, M., Rosario, K., Arguello-Astorga, G. R. & Varsani, A. (2013). High global diversity of cycloviruses amongst dragonflies. J Gen Virol 94, 1827-1840. [PubMed]

Delwart, E. & Li, L. (2012). Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes. Virus Res 164, 114-121. [PubMed]

Duchatel, J. P., Todd, D., Curry, A., Smyth, J. A., Bustin, J. C. & Vindevogel, H. (2005). New data on the transmission of pigeon circovirus. Vet Rec 157, 413-415. [PubMed]

Duchatel, J. P., Todd, D., Smyth, J. A., Bustin, J. C. & Vindevogel, H. (2006). Observations on detection, excretion and transmission of pigeon circovirus in adult, young and embryonic pigeons. Avian Pathol 35, 30-34. [PubMed]

Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797. [PubMed]

Faurez, F., Dory, D., Grasland, B. & Jestin, A. (2009). Replication of porcine circoviruses. Virol Journal 6, 60. [PubMed]

Gorbalenya, A. E. & Koonin, E. V. (1993). Helicases: amino acid sequence comparisons and structure-function relationships. Curr Opin Struct Biol 3, 419-429.

Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59, 307-321. [PubMed]

He, J., Cao, J., Zhou, N., Jin, Y., Wu, J. & Zhou, J. (2013). Identification and functional analysis of the novel ORF4 protein encoded by porcine circovirus type 2. J Virol 87, 1420-1429. [PubMed]

Hough, K. P., Rogers, A. M., Zelic, M., Paris, M. & Heilman, D. W. (2015). Transformed cell-specific induction of apoptosis by porcine circovirus type 1 viral protein 3. J Gen Virol 96, 351-359. [PubMed]

Ilyina, T. V. & Koonin, E. V. (1992). Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20, 3279-3285. [PubMed]

Kiupel, M., Stevenson, G. W., Galbreath, E. J., North, A., HogenEsch, H. & Mittal, S. K. (2005). Porcine circovirus type 2 (PCV2) causes apoptosis in experimentally inoculated BALB/c mice. BMC Vet Res 1, 7. [PubMed]

Koonin, E. V. (1993). A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res 21, 2541-2547. [PubMed]

Koonin, E. V., Dolja, V. V. & Krupovic, M. (2015). Origins and evolution of viruses of eukaryotes: The ultimate modularity. Virology 479-480, 2-25. [PubMed]

Li, L., Kapoor, A., Slikas, B., Bamidele, O. S., Wang, C., Shaukat, S., Masroor, M. A., Wilson, M. L., Ndjango, J. B., Peeters, M., Gross-Camp, N. D., Muller, M. N., Hahn, B. H., Wolfe, N. D., Triki, H., Bartkus, J., Zaidi, S. Z. & Delwart, E. (2010). Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J Virol 84, 1674-1682. [PubMed]

Li, Z., Wang, X., Zhang, R., Chen, J., Xia, L., Lin, S., Xie, Z. & Jiang, S. (2014). Evidence of possible vertical transmission of duck circovirus. Vet Microbiol 174, 229-232. [PubMed]

Liu, J., Chen, I. & Kwang, J. (2005). Characterization of a previously unidentified viral protein in porcine circovirus type 2-infected cells and its role in virus-induced apoptosis. J Virol 79, 8262-8274. [PubMed]

Lőrincz, M., Cságola, A., Farkas, S. L., Székely, C. & Tuboly, T. (2011). First detection and analysis of a fish circovirus. J Gen Virol 92, 1817-1821. [PubMed]

Lőrincz, M., Dán, Á., Láng, M., Csaba, G., Tóth, Á. G., Székely, C., Cságola, A. & Tuboly, T. (2012). Novel circovirus in European catfish (Silurus glanis). Arch Virol 157, 1173-1176. [PubMed]

Lv, Q., Guo, K., Zhang, G. & Zhang, Y. (2016). The ORF4 protein of porcine circovirus type 2 antagonizes apoptosis by stabilizing the concentration of ferritin heavy chain through physical interaction. J Gen Virol 97, 1636-1646. [PubMed]

Mahe, D., Blanchard, P., Truong, C., Arnauld, C., Le Cann, P., Cariolet, R., Madec, F., Albina, E. & Jestin, A. (2000). Differential recognition of ORF2 protein from type 1 and type 2 porcine circoviruses and identification of immunorelevant epitopes. J Gen Virol 81, 1815-1824. [PubMed]

Mankertz, A., Persson, F., Mankertz, J., Blaess, G. & Buhk, H. J. (1997). Mapping and characterization of the origin of DNA replication of porcine circovirus. J Virol 71, 2562-2566. [PubMed]

Muhire, B. M., Varsani, A. & Martin, D. P. (2014). SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PloS One 9, e108277. [PubMed]

Nawagitgul, P., Morozov, I., Bolin, S. R., Harms, P. A., Sorden, S. D. & Paul, P. S. (2000). Open reading frame 2 of porcine circovirus type 2 encodes a major capsid protein. J Gen Virol 81, 2281-2287. [PubMed]

Niagro, F. D., Forsthoefel, A. N., Lawther, R. P., Kamalanathan, L., Ritchie, B. W., Latimer, K. S. & Lukert, P. D. (1998). Beak and feather disease virus and porcine circovirus genomes: intermediates between the geminiviruses and plant circoviruses. Arch Virol 143, 1723-1744. [PubMed]

Phan, T. G., Luchsinger, V., Avendano, L. F., Deng, X. & Delwart, E. (2014). Cyclovirus in nasopharyngeal aspirates of Chilean children with respiratory infections. J Gen Virol 95, 922-927. [PubMed]

Phan, T. G., Mori, D., Deng, X., Rajindrajith, S., Ranawaka, U., Fan Ng, T. F., Bucardo-Rivera, F., Orlandi, P., Ahmed, K. & Delwart, E. (2015). Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage. Virology 482, 98-104. [PubMed]

Rahaus, M., Desloges, N., Probst, S., Loebbert, B., Lantermann, W. & Wolff, M. H. (2008). Detection of beak and feather disease virus DNA in embryonated eggs of psittacine birds. Veterinarni Medicina 53, 53-58.

Raidal, S. R. & Cross, G. M. (1994). The haemagglutination spectrum of psittacine beak and feather disease virus. Avian Pathol 23, 621-630. [PubMed]

Raidal, S. R., Sarker, S. & Peters, A. (2015). Review of psittacine beak and feather disease and its effect on Australian endangered species. Aust Vet J 93, 466-470. [PubMed]

Ritchie, B. W., Niagro, F. D., Latimer, K. S., Lukert, P. D., Steffens, W. L., 3rd, Rakich, P. M. & Pritchard, N. (1990). Ultrastructural, protein composition, and antigenic comparison of psittacine beak and feather disease virus purified from four genera of psittacine birds. J Wildl Dis 26, 196-203. [PubMed]

Ritchie, B. W., Niagro, F. D., Lukert, P. D., Steffens, W. L., 3rd & Latimer, K. S. (1989). Characterization of a new virus from cockatoos with psittacine beak and feather disease. Virology 171, 83-88. [PubMed]

Rosario, K., Breitbart, M., Harrach, B., Segales, J., Delwart, E., Biagini, P. & Varsani, A. (2017). Revisiting the taxonomy of the family Circoviridae: establishment of the genus Cyclovirus and removal of the genus Gyrovirus. Arch Virol 162, 1447-1463. [PubMed]

Rosario, K., Duffy, S. & Breitbart, M. (2012). A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics. Arch Virol 157, 1851-1871. [PubMed]

Rosario, K., Schenck, R. O., Harbeitner, R. C., Lawler, S. N. & Breitbart, M. (2015). Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins. Front Microbiol 6, 696. [PubMed]

Rose, N., Opriessnig, T., Grasland, B. & Jestin, A. (2012). Epidemiology and transmission of porcine circovirus type 2 (PCV2). Virus Res 164, 78-89. [PubMed]

Smits, S. L., Zijlstra, E. E., van Hellemond, J. J., Schapendonk, C. M., Bodewes, R., Schurch, A. C., Haagmans, B. L. & Osterhaus, A. D. (2013). Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010-2011. Emerging Infect Dis 19. [PubMed]

Steinfeldt, T., Finsterbusch, T. & Mankertz, A. (2001). Rep and Rep' protein of porcine circovirus type 1 bind to the origin of replication in vitro. Virology 291, 152-160. [PubMed]

Steinfeldt, T., Finsterbusch, T. & Mankertz, A. (2006). Demonstration of nicking/joining activity at the origin of DNA replication associated with the rep and rep' proteins of porcine circovirus type 1. J Virol 80, 6225-6234. [PubMed]

Steinfeldt, T., Finsterbusch, T. & Mankertz, A. (2007). Functional analysis of cis- and trans-acting replication factors of porcine circovirus type 1. J Virol 81, 5696-5704. [PubMed]

Tan le, V., van Doorn, H. R., Nghia, H. D., Chau, T. T., Tu le, T. P., de Vries, M., Canuti, M., Deijs, M., Jebbink, M. F., Baker, S., Bryant, J. E., Tham, N. T., NT, B. K., Boni, M. F., Loi, T. Q., Phuong le, T., Verhoeven, J. T., Crusat, M., Jeeninga, R. E., Schultsz, C., Chau, N. V., Hien, T. T., van der Hoek, L., Farrar, J. & de Jong, M. D. (2013). Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections. mBio 4, e00231-00213. [PubMed]

Tischer, I., Gelderblom, H., Vettermann, W. & Koch, M. A. (1982). A very small porcine virus with circular single-stranded DNA. Nature 295, 64-66. [PubMed]

Tischer, I., Peters, D., Rasch, R. & Pociuli, S. (1987). Replication of porcine circovirus: induction by glucosamine and cell cycle dependence. Arch Virol 96, 39-57. [PubMed]

Todd, D. (2000). Circoviruses: immunosuppressive threats to avian species: a review. Avian Pathol 29, 373-394. [PubMed]

Todd, D., Niagro, F. D., Ritchie, B. W., Curran, W., Allan, G. M., Lukert, P. D., Latimer, K. S., Steffens, W. L., 3rd & McNulty, M. S. (1991). Comparison of three animal viruses with circular single-stranded DNA genomes. Arch Virol 117, 129-135. [PubMed]