References: Togaviridae

References: Togaviridae

Ahola, T. & Kaariainen, L. (1995).Reaction in alphavirus mRNA capping: formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP. Proc Natl Acad Sci USA92, 507-511. [PubMed] 

Arrigo, N. C., Adams, A. P. & Weaver, S. C. (2010).Evolutionary patterns of eastern equine encephalitis virus in North versus South America suggest ecological differences and taxonomic revision. J Virol84, 1014-1025. [PubMed]

Bardeletti, G., Tektoff, J. & Gautheron, D. (1979).Rubella virus maturation and production in two host cell systems. Intervirology11, 97-103. [PubMed]

Battisti, A. J., Yoder, J. D., Plevka, P., Winkler, D. C., Prasad, V. M., Kuhn, R. J., Frey, T. K., Steven, A. C. & Rossmann, M. G. (2012).Cryo-electron tomography of rubella virus. J Virol86, 11078-11085. [PubMed] 

Best, J. M., Thomson, A., Nores, J. R., O'Shea, S. & Banatvala, J. E. (1992).Rubella virus strains show no major antigenic differences. Intervirology34, 164-168. [PubMed]

Calisher, C. H., Kinney, R. M., de Souza Lopes, O., Trent, D. W., Monath, T. P. & Francy, D. B. (1982).Identification of a new Venezuelan equine encephalitis virus from Brazil. Am J Trop Med Hyg31, 1260-1272. [PubMed]

Causey, O. R., Casals, J., Shope, R. E. & Udomsakdi, S. (1963).Aura and Una, two new group A arthropod-borne viruses. Am J Trop Med Hyg12, 777-781. [PubMed]

Cheng, R. H., Kuhn, R. J., Olson, N. H., Rossmann, M. G., Choi, H. K., Smith, T. J. & Baker, T. S. (1995).Nucleocapsid and glycoprotein organization in an enveloped virus. Cell80, 621-630. [PubMed]

Choi, H. K., Tong, L., Minor, W., Dumas, P., Boege, U., Rossmann, M. G. & Wengler, G. (1991).Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion. Nature354, 37-43. [PubMed]

Dominguez, G., Wang, C. Y. & Frey, T. K. (1990).Sequence of the genome RNA of rubella virus: evidence for genetic rearrangement during togavirus evolution. Virology177, 225-238. [PubMed]

Dube, M., Etienne, L., Fels, M. & Kielian, M. (2016).Calcium-dependent rubella virus fusion occurs in early endosomes. J Virol90, 6303-6313. [PubMed]

Dube, M., Rey, F. A. & Kielian, M. (2014).Rubella virus: first calcium-requiring viral fusion protein. PLoS Pathog10, e1004530. [PubMed]

DuBois, R. M., Vaney, M. C., Tortorici, M. A., Kurdi, R. A., Barba-Spaeth, G., Krey, T. & Rey, F. A. (2013).Functional and evolutionary insight from the crystal structure of rubella virus protein E1. Nature493, 552-556. [PubMed]

Firth, A. E., Chung, B. Y., Fleeton, M. N. & Atkins, J. F. (2008).Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma. Virol J5, 108. [PubMed]

Frey, T. K. (1994).Molecular biology of rubella virus. Adv Virus Res44, 69-160. [PubMed]

Frolova, E. I., Gorchakov, R., Pereboeva, L., Atasheva, S. & Frolov, I. (2010).Functional Sindbis virus replicative complexes are formed at the plasma membrane. J Virol84, 11679-11695. [PubMed]

Gliedman, J. B., Smith, J. F. & Brown, D. T. (1975).Morphogenesis of Sindbis virus in cultured Aedes albopictuscells. J Virol16, 913-926. [PubMed]

Gonzalez, M. E. & Carrasco, L. (2003).Viroporins. FEBS Lett552, 28-34. [PubMed]

Hayes, R. O., Francy, D. B., Lazuick, J. S., Smith, G. C. & Gibbs, E. P. J. (1977).Role of the cliff swallow bug (Oeciacus vicarius) in the natural cycle of a western equine encephalitis-related alphavirus. J Med Entomol14, 257-262. [

Hernandez, R., Ferreira, D., Sinodis, C., Litton, K. & Brown, D. T. (2005).Single amino acid insertions at the junction of the sindbis virus E2 transmembrane domain and endodomain disrupt virus envelopment and alter infectivity. J Virol79, 7682-7697. [PubMed]

Hobman, T. C. (2013).Rubella Virus. In Fields Virology, pp. 687-711. Edited by D. M. Knipe & P. M. Howley. Philadelphia, USA: Lippincott Williams & Wilkins.

Jose, J., Przybyla, L., Edwards, T. J., Perera, R., Burgner, J. W., 2nd & Kuhn, R. J. (2012).Interactions of the cytoplasmic domain of Sindbis virus E2 with nucleocapsid cores promote alphavirus budding. J Virol86, 2585-2599. [PubMed] 

Jose, J., Snyder, J. E. & Kuhn, R. J. (2009).A structural and functional perspective of alphavirus replication and assembly. Future Microbiol4, 837-856. [PubMed]

Kalvodova, L., Sampaio, J. L., Cordo, S., Ejsing, C. S., Shevchenko, A. & Simons, K. (2009).The lipidomes of vesicular stomatitis virus, Semliki forest virus, and the host plasma membrane analyzed by quantitative shotgun mass spectrometry. J Virol83, 7996-8003. [PubMed] 

Kielian, M. (2014).Mechanisms of Virus Membrane Fusion Proteins. Annu Rev Virol1, 171-189. [PubMed]

Kielian, M., Chanel-Vos, C. & Liao, M. (2010).Alphavirus Entry and Membrane Fusion. Viruses2, 796-825. [PubMed]

Kielian, M., Chatterjee, P. K., Gibbons, D. L. & Lu, Y. E. (2000).Specific roles for lipids in virus fusion and exit. Examples from the alphaviruses. Subcell Biochem34, 409-455. [PubMed]

Kim, D. Y., Reynaud, J. M., Rasalouskaya, A., Akhrymuk, I., Mobley, J. A., Frolov, I. & Frolova, E. I. (2016).New World and Old World alphaviruses have evolved to exploit different components of stress granules, FXR and G3BP proteins, for assembly of viral replication complexes. PLoS Pathog12, e1005810. [PubMed]

Kononchik, J. P., Jr., Hernandez, R. & Brown, D. T. (2011).An alternative pathway for alphavirus entry. Virol J8, 304. [PubMed]

Kuhn, R. J. (2013).Togaviridae. In Fields' Virology, pp. 629-650. Edited by D. M. Knipe & P. M. Howley. Philadelphia, USA: Lippincott Williams & Wilkins.

La Linn, M., Gardner, J., Warrilow, D., Darnell, G. A., McMahon, C. R., Field, I., Hyatt, A. D., Slade, R. W. & Suhrbier, A. (2001).Arbovirus of marine mammals: a new alphavirus isolated from the elephant seal louse, Lepidophthirus macrorhini. J Virol75, 4103-4109. [PubMed]

Lee, S., Owen, K. E., Choi, H. K., Lee, H., Lu, G., Wengler, G., Brown, D. T., Rossmann, M. G. & Kuhn, R. J. (1996).Identification of a protein binding site on the surface of the alphavirus nucleocapsid and its implication in virus assembly. Structure4, 531-541. [PubMed]

Lemm, J. A., Rumenapf, T., Strauss, E. G., Strauss, J. H. & Rice, C. M. (1994).Polypeptide requirements for assembly of functional Sindbis virus replication complexes: a model for the temporal regulation of minus- and plus-strand RNA synthesis. EMBO J13, 2925-2934. [PubMed]

Leparc-Goffart, I., Nougairede, A., Cassadou, S., Prat, C. & de Lamballerie, X. (2014).Chikungunya in the Americas. Lancet383, 514. [PubMed]

Li, L., Jose, J., Xiang, Y., Kuhn, R. J. & Rossmann, M. G. (2010).Structural changes of envelope proteins during alphavirus fusion. Nature468, 705-708. [PubMed]

Lu, Y. E. & Kielian, M. (2000).Semliki forest virus budding: assay, mechanisms, and cholesterol requirement. J Virol74, 7708-7719. [PubMed]

Lundstrom, M. L., Mauracher, C. A. & Tingle, A. J. (1991).Characterization of carbohydrates linked to rubella virus glycoprotein E2. J Gen Virol72 ( Pt 4), 843-850. [PubMed]

Lwande, O. W., Lutomiah, J., Obanda, V., Gakuya, F., Mutisya, J., Mulwa, F., Michuki, G., Chepkorir, E., Fischer, A., Venter, M. & Sang, R. (2013).Isolation of tick and mosquito-borne arboviruses from ticks sampled from livestock and wild animal hosts in Ijara District, Kenya. Vector Borne Zoonotic Dis13, 637-642. [PubMed]

Mangala Prasad, V., Klose, T. & Rossmann, M. G. (2017).Assembly, maturation and three-dimensional helical structure of the teratogenic rubella virus. PLoS Pathog13, e1006377. [PubMed]

Mangala Prasad, V., Willows, S. D., Fokine, A., Battisti, A. J., Sun, S., Plevka, P., Hobman, T. C. & Rossmann, M. G. (2013).Rubella virus capsid protein structure and its role in virus assembly and infection. Proc Natl Acad Sci USA110, 20105-20110. [PubMed]

Marquardt, M. T., Phalen, T. & Kielian, M. (1993).Cholesterol is required in the exit pathway of Semliki Forest virus. J Cell Biol123, 57-65. [PubMed]

Nasar, F., Palacios, G., Gorchakov, R. V., Guzman, H., Da Rosa, A. P., Savji, N., Popov, V. L., Sherman, M. B., Lipkin, W. I., Tesh, R. B. & Weaver, S. C. (2012).Eilat virus, a unique alphavirus with host range restricted to insects by RNA replication. Proc Natl Acad Sci USA109, 14622-14627. [PubMed]

Nunes, M. R., Faria, N. R., de Vasconcelos, J. M., Golding, N., Kraemer, M. U., de Oliveira, L. F., Azevedo Rdo, S., da Silva, D. E., da Silva, E. V., da Silva, S. P., Carvalho, V. L., Coelho, G. E., Cruz, A. C., Rodrigues, S. G., Vianez, J. L., Jr., Nunes, B. T., Cardoso, J. F., Tesh, R. B., Hay, S. I., Pybus, O. G. & Vasconcelos, P. F. (2015).Emergence and potential for spread of Chikungunya virus in Brazil. BMC medicine13, 102. [PubMed]

Oker-Blom, C., Ulmanen, I., Kaariainen, L. & Pettersson, R. F. (1984).Rubella virus 40S genome RNA specifies a 24S subgenomic mRNA that codes for a precursor to structural proteins. J Virol49, 403-408. [PubMed] 

Ou, J. H., Rice, C. M., Dalgarno, L., Strauss, E. G. & Strauss, J. H. (1982).Sequence studies of several alphavirus genomic RNAs in the region containing the start of the subgenomic RNA. Proc Natl Acad Sci USA79, 5235-5239. [PubMed]

Owen, K. E. & Kuhn, R. J. (1997).Alphavirus budding is dependent on the interaction between the nucleocapsid and hydrophobic amino acids on the cytoplasmic domain of the E2 envelope glycoprotein. Virology230, 187-196. [PubMed]

Park, S. L., Huang, Y. J., Hsu, W. W., Hettenbach, S. M., Higgs, S. & Vanlandingham, D. L. (2016).Virus-specific thermostability and heat inactivation profiles of alphaviruses. J Virol Methods234, 152-155. [PubMed]

Parkman, P. D. (1965).Biological characteristics of rubella virus. Archiv fur die gesamte Virusforschung16, 401-411. [PubMed]

Pietilä, M. K., Hellstrom, K. & Ahola, T. (2017).Alphavirus polymerase and RNA replication. Virus Res234, 44-57. [PubMed]

Powers, A. M., Brault, A. C., Shirako, Y., Strauss, E. G., Kang, W., Strauss, J. H. & Weaver, S. C. (2001).Evolutionary relationships and systematics of the alphaviruses. J Virol75, 10118-10131. [PubMed]

Qiu, Z., Hobman, T. C., McDonald, H. L., Seto, N. O. & Gillam, S. (1992).Role of N-linked oligosaccharides in processing and intracellular transport of E2 glycoprotein of rubella virus. J Virol66, 3514-3521. [PubMed] 

Ramsey, J. & Mukhopadhyay, S. (2017).Disentangling the frames, the state of research on the alphavirus 6K and TF proteins. Viruses9. [PubMed]

Ramsey, J., Renzi, E. C., Arnold, R. J., Trinidad, J. C. & Mukhopadhyay, S. (2017).Palmitoylation of Sindbis virus TF protein regulates its plasma membrane localization and subsequent incorporation into virions. J Virol91. [PubMed]

Rice, C. M. & Strauss, J. H. (1982).Association of sindbis virion glycoproteins and their precursors. J Mol Biol154, 325-348. [PubMed]

Risco, C., Carrascosa, J. L. & Frey, T. K. (2003).Structural maturation of rubella virus in the Golgi complex. Virology312, 261-269. [PubMed] 

Rozanov, M. N., Koonin, E. V. & Gorbalenya, A. E. (1992).Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J Gen Virol73 ( Pt 8), 2129-2134. [PubMed]

Sanz, M. A., Perez, L. & Carrasco, L. (1994).Semliki Forest virus 6K protein modifies membrane permeability after inducible expression in Escherichia coli cells. J Biol Chem269, 12106-12110. [PubMed]

Sefton, B. M. (1977).Immediate glycosylation of Sindbis virus membrane proteins. Cell10, 659-668. [PubMed] 

Shabman, R. S., Rogers, K. M. & Heise, M. T. (2008).Ross River virus envelope glycans contribute to type I interferon production in myeloid dendritic cells. J Virol82, 12374-12383. [PubMed]

Skoging, U., Vihinen, M., Nilsson, L. & Liljestrom, P. (1996).Aromatic interactions define the binding of the alphavirus spike to its nucleocapsid. Structure4, 519-529. [PubMed]

Snyder, J. E., Kulcsar, K. A., Schultz, K. L., Riley, C. P., Neary, J. T., Marr, S., Jose, J., Griffin, D. E. & Kuhn, R. J. (2013).Functional characterization of the alphavirus TF protein. J Virol87, 8511-8523. [PubMed]

Sokoloski, K. J., Dickson, A. M., Chaskey, E. L., Garneau, N. L., Wilusz, C. J. & Wilusz, J. (2010).Sindbis virus usurps the cellular HuR protein to stabilize its transcripts and promote productive infections in mammalian and mosquito cells. Cell Host Microbe8, 196-207. [PubMed]

Sokoloski, K. J., Snyder, A. J., Liu, N. H., Hayes, C. A., Mukhopadhyay, S. & Hardy, R. W. (2013).Encapsidation of host-derived factors correlates with enhanced infectivity of Sindbis virus. J Virol87, 12216-12226. [PubMed]

Spuul, P., Balistreri, G., Kaariainen, L. & Ahola, T. (2010).Phosphatidylinositol 3-kinase-, actin-, and microtubule-dependent transport of Semliki Forest Virus replication complexes from the plasma membrane to modified lysosomes. J Virol84, 7543-7557. [PubMed]

Strauss, J. H. & Strauss, E. G. (1994).The alphaviruses: gene expression, replication, and evolution. Microbiol Rev58, 491-562. [PubMed]

Strauss, J. H. & Strauss, E. G. (2008).Viruses and human disease. Amsterdam / Boston: Elsevier / Academic Press.

Vancini, R., Hernandez, R. & Brown, D. (2015).Alphavirus entry into host cells. Prog Mol Biol Trans Sci129, 33-62. [PubMed]

Vaney, M. C., Duquerroy, S. & Rey, F. A. (2013).Alphavirus structure: activation for entry at the target cell surface. Curr Opin Virol3, 151-158. [PubMed]

Vaney, M. C. & Rey, F. A. (2011).Class II enveloped viruses. Cell Microbiol13, 1451-1459. [PubMed]

Vasiljeva, L., Merits, A., Golubtsov, A., Sizemskaja, V., Kaariainen, L. & Ahola, T. (2003).Regulation of the sequential processing of Semliki Forest virus replicase polyprotein. J Biol Chem278, 41636-41645. [PubMed]

Voss, J. E., Vaney, M. C., Duquerroy, S., Vonrhein, C., Girard-Blanc, C., Crublet, E., Thompson, A., Bricogne, G. & Rey, F. A. (2010).Glycoprotein organization of Chikungunya virus particles revealed by X-ray crystallography. Nature468, 709-712. [PubMed]

Weston, J. H., Welsh, M. D., McLoughlin, M. F. & Todd, D. (1999).Salmon pancreas disease virus, an alphavirus infecting farmed Atlantic salmon, Salmo salar L. Virology256, 188-195. [PubMed]

Wilkinson, T. A., Tellinghuisen, T. L., Kuhn, R. J. & Post, C. B. (2005).Association of sindbis virus capsid protein with phospholipid membranes and the E2 glycoprotein: implications for alphavirus assembly. Biochemistry44, 2800-2810. [PubMed]

Zhang, R., Hryc, C. F., Cong, Y., Liu, X., Jakana, J., Gorchakov, R., Baker, M. L., Weaver, S. C. & Chiu, W. (2011).4.4 Å cryo-EM structure of an enveloped alphavirus Venezuelan equine encephalitis virus. EMBO J30, 3854-3863. [PubMed]