References: Potyviridae

References: Potyviridae

Adams, M. J., J. F. Antoniw and F. Beaudoin (2005a). Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6: 471-87. [PubMed]

Adams, M. J., J. F. Antoniw and C. M. Fauquet (2005b). Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150: 459-79. [PubMed]

Bos, L., J. Diaz-Ruiz and D. Maat (1978). Further characterization of celery latent virus. Neth J Plant Pathol 84: 61-79.

Brandes, J. and E. Luisoni (1966). Untersuchungen über emige Eigenschaften von zwei gestreckten Sellerieviren [In German]. J Phytopathol 57: 277-88.

Chai, M., X. Wu, J. Liu, Y. Fang, Y. Luan, X. Cui, X. Zhou, A. Wang and X. Cheng (2020). P3N-PIPO interacts with P3 via the shared N-terminal domain to recruit viral replication vesicles for cell-to-cell movement. J Virol 94: jvi.01898-19. [PubMed]

Chung, B. Y., W. A. Miller, J. F. Atkins and A. E. Firth (2008). An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105: 5897-902. [PubMed]

Cuesta, R., C. Yuste-Calvo, D. Gil-Cartón, F. Sánchez, F. Ponz and M. Valle (2019). Structure of Turnip mosaic virus and its viral-like particles. Sci Rep 9: 15396. [PubMed]

Cui, H. and A. Wang (2016). Plum pox virus 6K1 protein Is required for viral replication and targets the viral replication complex at the early stage of infection. J Virol 90: 5119-31. [PubMed]

Cui, X., H. Yaghmaiean, G. Wu, X. Wu, X. Chen, G. Thorn and A. Wang (2017). The C-terminal region of the Turnip mosaic virus P3 protein is essential for viral infection via targeting P3 to the viral replication complex. Virology 510: 147-55. [PubMed]

Darriba, D., D. Posada, A. M. Kozlov, A. Stamatakis, B. Morel and T. Flouri (2020). ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models. Mol Biol Evol 37: 291-4. [PubMed]

French, R. and D. C. Stenger (2005). Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus in the family Potyviridae. Arch Virol 150: 299-312. [PubMed]

Gabrenaite-Verkhovskaya, R., I. A. Andreev, N. O. Kalinina, L. Torrance, M. E. Taliansky and K. Mäkinen (2008). Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants. J Gen Virol 89: 829-38. [PubMed]

Gibbs, A. and K. Ohshima (2010). Potyviruses and the digital revolution. Annu Rev Phytopathol 48: 205-23. [PubMed]

Gibbs, A. J., M. Hajizadeh, K. Ohshima and R. A. C. Jones (2020). The potyviruses: an evolutionary synthesis is emerging. Viruses 12: v12020132. [PubMed]

Guindon, S., J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk and O. Gascuel (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-21. [PubMed]

Hafrén, A., A. Lõhmus and K. Mäkinen (2015). Formation of potato virus A-induced RNA granules and viral translation are interrelated processes required for optimal virus accumulation. PLoS Pathog 11: e1005314. [PubMed]

Harth, J., H. Simmons and A. Stephenson (2017). Vertical infection of Zucchini yellow mosaic virus via pollen transmission occurs at a lower frequency than ovule transmission. Eur J Plant Pathol 147: 717-20.

Jones, R. A. C. (2018). Plant and insect viruses in managed and natural environments: novel and neglected transmission pathways. Adv Virus Res 101: 149-87. [PubMed]

Kondo, T. and T. Fujita (2012). Complete nucleotide sequence and construction of an infectious clone of Chinese yam necrotic mosaic virus suggest that macluraviruses have the smallest genome among members of the family Potyviridae. Arch Virol 157: 2299-307. [PubMed]

Kumar, S., G. Stecher, M. Li, C. Knyaz and K. Tamura (2018). MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol 35: 1547-9. [PubMed]

Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson and D. G. Higgins (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-8. [PubMed]

Le, S. Q. and O. Gascuel (2008). An improved general amino acid replacement matrix. Mol Biol Evol 25: 1307-20. [PubMed]

Li, F., D. Xu, J. Abad and R. Li (2012). Phylogenetic relationships of closely related potyviruses infecting sweet potato determined by genomic characterization of Sweet potato virus G and Sweet potato virus 2. Virus Genes 45: 118-25. [PubMed]

Li, W., M. E. Hilf, S. E. Webb, C. A. Baker and S. Adkins (2008). Presence of P1b and absence of HC-Pro in Squash vein yellowing virus suggests a general feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135: 213-9. [PubMed]

Mbanzibwa, D. R., Y. Tian, S. B. Mukasa and J. P. Valkonen (2009). Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1 pyrophosphatase implicated in reduction of mutations and a P1 proteinase that suppresses RNA silencing but contains no HC-Pro. J Virol 83: 6934-40. [PubMed]

Mbanzibwa, D. R., Y. P. Tian, A. K. Tugume, B. L. Patil, J. S. Yadav, B. Bagewadi, M. M. Abarshi, T. Alicai, W. Changadeya, J. Mkumbira, M. B. Muli, S. B. Mukasa, F. Tairo, Y. Baguma, S. Kyamanywa, A. Kullaya, M. N. Maruthi, C. M. Fauquet and J. P. Valkonen (2011). Evolution of cassava brown streak disease-associated viruses. J Gen Virol 92: 974-87. [PubMed]

Mingot, A., A. Valli, B. Rodamilans, D. San León, D. C. Baulcombe, J. A. García and J. J. López-Moya (2016). The P1N-PISPO trans-frame gene of sweet potato feathery mottle potyvirus is produced during virus infection and functions as an RNA silencing suppressor. J Virol 90: 3543-57. [PubMed]

Mollov, D., B. Lockhart and D. Zlesak (2013). Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae. Arch Virol 158: 1917-23. [PubMed]

Moury, B. and C. Desbiez (2020). Host range evolution of potyviruses: a global phylogenetic analysis. Viruses 12: v12010111. [PubMed]

Olspert, A., J. P. Carr and A. E. Firth (2016). Mutational analysis of the Potyviridae transcriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins. Nucleic Acids Res 44: 7618-29. [PubMed]

Revers, F. and J. A. García (2015). Molecular biology of potyviruses. Adv Virus Res 92: 101-99. [PubMed]

Rodamilans, B., A. Valli, A. Mingot, D. San Leon, D. Baulcombe, J. J. Lopez-Moya and J. A. Garcia (2015). RNA polymerase slippage as a mechanism for the production of frameshift gene products in plant viruses of the Potyviridae family. J Virol 89: 6965-7. [PubMed]

Rose, H., I. Döring, H. J. Vetten, W. Menzel, K. R. Richert-Pöggeler and E. Maiss (2019). Complete genome sequence and construction of an infectious full-length cDNA clone of celery latent virus - an unusual member of a putative new genus within the Potyviridae. J Gen Virol 100: 308-20. [PubMed]

Seo, J. K., H. R. Kwak, M. K. Kim, J. S. Kim and H. S. Choi (2017). The complete genome sequence of a novel virus, bellflower veinal mottle virus, suggests the existence of a new genus within the family Potyviridae. Arch Virol 162: 2457-61. [PubMed]

Shukla, D. D. and C. W. Ward (1989). Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv Virus Res 36: 273-314. [PubMed]

Stenger, D. C., J. S. Hall, I. R. Choi and R. French (1998). Phylogenetic relationships within the family Potyviridae: wheat streak mosaic virus and brome streak mosaic virus are not members of the genus Rymovirus. Phytopathology 88: 782-7. [PubMed]

Susaimuthu, J., I. E. Tzanetakis, R. C. Gergerich and R. R. Martin (2008). A member of a new genus in the Potyviridae infects Rubus. Virus Res 131: 145-51. [PubMed]

Tatineni, S., F. Qu, R. Li, T. J. Morris and R. French (2012). Triticum mosaic poacevirus enlists P1 rather than HC-Pro to suppress RNA silencing-mediated host defense. Virology 433: 104-15. [PubMed]

Tavert-Roudet, G., A. Anne, A. Barra, A. Chovin, C. Demaille and T. Michon (2017). The potyvirus particle recruits the plant translation initiation factor eIF4E by means of the VPg covalently linked to the viral RNA. Mol Plant Microbe Interact 30: 754-62. [PubMed]

Torrance, L., I. A. Andreev, R. Gabrenaite-Verhovskaya, G. Cowan, K. Makinen and M. E. Taliansky (2006). An unusual structure at one end of potato potyvirus particles. J Mol Biol 357: 1-8. [PubMed]

Untiveros, M., A. Olspert, K. Artola, A. E. Firth, J. F. Kreuze and J. P. Valkonen (2016). A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing. Mol Plant Pathol 17: 1111-23. [PubMed]

Valli, A., A. M. Martín-Hernández, J. J. López-Moya and J. A. García (2006). RNA silencing suppression by a second copy of the P1 serine protease of Cucumber vein yellowing ipomovirus, a member of the family Potyviridae that lacks the cysteine protease HCPro. J Virol 80: 10055-63. [PubMed]

Wang, A. (2021). Cell-to-cell movement of plant viruses via plasmodesmata: a current perspective on potyviruses. Curr Opin Virol 48: 10-6. [PubMed]

Wei, T. and A. Wang (2008). Biogenesis of cytoplasmic membranous vesicles for plant potyvirus replication occurs at endoplasmic reticulum exit sites in a COPI- and COPII-dependent manner. J Virol 82: 12252-64. [PubMed]

Winter, S., M. Koerbler, B. Stein, A. Pietruszka, M. Paape and A. Butgereitt (2010). Analysis of cassava brown streak viruses reveals the presence of distinct virus species causing cassava brown streak disease in East Africa. J Gen Virol 91: 1365-72. [PubMed]

Wylie, S. J., A. J. Tan, H. Li, K. W. Dixon and M. G. Jones (2012). Caladenia virus A, an unusual new member of the family Potyviridae from terrestrial orchids in Western Australia. Arch Virol 157: 2447-52. [PubMed]

Yang, K., M. Ran, Z. Li, M. Hu, L. Zheng, W. Liu, P. Jin, W. Miao, P. Zhou, W. Shen and H. Cui (2018). Analysis of the complete genomic sequence of a novel virus, areca palm necrotic spindle-spot virus, reveals the existence of a new genus in the family Potyviridae. Arch Virol 163: 3471-5. [PubMed]

Yang, K., W. Shen, Y. Li, Z. Li, W. Miao, A. Wang and H. Cui (2019). Areca palm necrotic ringspot virus, classified within a recently proposed genus Arepavirus of the family Potyviridae, is associated with necrotic ringspot disease in areca palm. Phytopathology 109: 887-94. [PubMed]

Yang, X., Y. Li and A. Wang (2021). Research advances in potyviruses: from the laboratory bench to the field. Annu Rev Phytopathol 59: 1-29. [PubMed]

You, Y. and Y. Shirako (2010). Bymovirus reverse genetics: requirements for RNA2-encoded proteins in systemic infection. Mol Plant Pathol 11: 383-94. [PubMed]

Zamora, M., E. Méndez-López, X. Agirrezabala, R. Cuesta, J. L. Lavín, M. A. Sánchez-Pina, M. A. Aranda and M. Valle (2017). Potyvirus virion structure shows conserved protein fold and RNA binding site in ssRNA viruses. Sci Adv 3: eaao2182. [PubMed]