References: Marnaviridae

References: Marnaviridae

Culley, A. I., A. S. Lang and C. A. Suttle (2007). The complete genomes of three viruses assembled from shotgun libraries of marine RNA virus communities. Virol J 4: 69. [PubMed]

Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-7. [PubMed]

Greninger, A. L. and J. L. DeRisi (2015). Draft genome sequences of marine RNA viruses SF-1, SF-2, and SF-3 recovered from San Francisco wastewater. Genome Announc 3: e00653-15. [PubMed]

Guindon, S., J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk and O. Gascuel (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-21. [PubMed]

Kimura, K. and Y. Tomaru (2015). Discovery of two novel viruses expands the diversity of single-stranded DNA and single-stranded RNA viruses infecting a cosmopolitan marine diatom. Appl Environ Microbiol 81: 1120-31. [PubMed]

Koonin, E. V. and V. V. Dolja (1993). Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28: 375-430. [PubMed]

Lachnit, T., T. Thomas and P. Steinberg (2015). Expanding our understanding of the seaweed holobiont: RNA viruses of the red alga Delisea pulchra. Front Microbiol 6: 1489. [PubMed]

Lang, A. S., A. I. Culley and C. A. Suttle (2004). Genome sequence and characterization of a virus (HaRNAV) related to picorna-like viruses that infects the marine toxic bloom-forming alga Heterosigma akashiwo. Virology 320: 206-17. [PubMed]

Larsson, A. (2014). AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276-8. [PubMed]

Lefort, V., J. E. Longueville and O. Gascuel (2017). SMS: Smart Model Selection in PhyML. Mol Biol Evol 34: 2422-2424. [PubMed]

Letunic, I. and P. Bork (2016). Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res 44: W242-5. [PubMed]

López-Bueno, A., A. Rastrojo, R. Peiró, M. Arenas and A. Alcamí (2015). Ecological connectivity shapes quasispecies structure of RNA viruses in an Antarctic lake. Mol Ecol 24: 4812-25. [PubMed]

Miranda, J. A., A. I. Culley, C. R. Schvarcz and G. F. Steward (2016). RNA viruses as major contributors to Antarctic virioplankton. Environ Microbiol 18: 3714-3727. [PubMed]

Moniruzzaman, M., L. L. Wurch, H. Alexander, S. T. Dyhrman, C. J. Gobler and S. W. Wilhelm (2017). Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics. Nat Commun 8: 16054. [PubMed]

Munke, A., K. Kimura, Y. Tomaru and K. Okamoto (2020). Capsid structure of a marine algal virus of the order Picornavirales. J Virol 94: e01855-19. [PubMed]

Nagasaki, K., Y. Tomaru, N. Katanozaka, Y. Shirai, K. Nishida, S. Itakura and M. Yamaguchi (2004). Isolation and characterization of a novel single-stranded RNA virus infecting the bloom-forming diatom Rhizosolenia setigera. Appl Environ Microbiol 70: 704-11. [PubMed]

Shi, M., X.-D. Lin, J.-H. Tian, L.-J. Chen, X. Chen, C.-X. Li, X.-C. Qin, J. Li, J.-P. Cao, J.-S. Eden, J. Buchmann, W. Wang, J. Xu, E. C. Holmes and Y.-Z. Zhang (2016). Redefining the invertebrate RNA virosphere. Nature 540: 539-543. [PubMed]

Shirai, Y., Y. Takao, H. Mizumoto, Y. Tomaru, D. Honda and K. Nagasaki (2006). Genomic and phylogenetic analysis of a single-stranded RNA virus infecting Rhizosolenia setigera (Stramenopiles: Bacillariophyceae). J Mar Biol Assoc UK 86: 475-483.

Shirai, Y., Y. Tomaru, Y. Takao, H. Suzuki, T. Nagumo and K. Nagasaki (2008). Isolation and characterization of a single-stranded RNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl Environ Microbiol 74: 4022-7. [PubMed]

Tai, V., J. E. Lawrence, A. S. Lang, A. M. Chan, A. I. Culley and C. A. Suttle (2003). Characterization of HaRNAV, a single‐stranded RNA virus causing lysis of Heterosigma akashiwo (Raphidophyceae) J Phycol 39: 343-352.

Takao, Y., K. Mise, K. Nagasaki, T. Okuno and D. Honda (2006). Complete nucleotide sequence and genome organization of a single-stranded RNA virus infecting the marine fungoid protist Schizochytrium sp. J Gen Virol 87: 723-733. [PubMed]

Takao, Y., K. Nagasaki, K. Mise, T. Okuno and D. Honda (2005). Isolation and characterization of a novel single-stranded RNA Virus infectious to a marine fungoid protist, Schizochytrium sp. (Thraustochytriaceae, Labyrinthulea). Appl Environ Microbiol 71: 4516-22. [PubMed]

Tomaru, Y., Y. Takao, H. Suzuki, T. Nagumo and K. Nagasaki (2009). Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom Chaetoceros socialis. Appl Environ Microbiol 75: 2375-81. [PubMed]

Tomaru, Y., K. Tarutani, M. Yamaguchi and K. Nagasaki (2004). Quantitative and qualitative impacts of viral infection on a Heterosigma akashiwo (Raphidophyceae) bloom in Hiroshima Bay, Japan. Aquat Microb Ecol 34: 227-238.

Tomaru, Y., K. Toyoda, K. Kimura, N. Hata, M. Yoshida and K. Nagasaki (2012). First evidence for the existence of pennate diatom viruses. ISME J 6: 1445-8. [PubMed]

Tomaru, Y., K. Toyoda, K. Kimura, Y. Takao, K. Sakurada, N. Nakayama and K. Nagasaki (2013). Isolation and characterization of a single‐stranded RNA virus that infects the marine planktonic diatom Chaetoceros sp.(SS08‐C03). Phycol Res 61: 27-36.

Vlok, M., A. S. Lang and C. A. Suttle (2019a). Application of a sequence-based taxonomic classification method to uncultured and unclassified marine single-stranded RNA viruses in the order Picornavirales. Virus Evol 5: vez056. [PubMed]

Vlok, M., A. S. Lang and C. A. Suttle (2019b). Marine RNA virus quasispecies are distributed throughout the oceans. mSphere 4: e00157-19. [PubMed]