References: Hypoviridae


References: Hypoviridae

Bryner, S. F., Rigling, D. & Brunner, P. C. (2012). Invasion history and demographic pattern of Cryphonectria hypovirus 1 across European populations of the chestnut blight fungus. Ecol Evol 2, 3227-3241. [PubMed]

Chen, B., Choi, G. H. & Nuss, D. L. (1994). Attenuation of fungal virulence by synthetic infectious hypovirus transcripts. Science 264, 1762-1764. [PubMed]

Chen, B. & Nuss, D. L. (1999). Infectious cDNA clone of hypovirus CHV1-Euro7: a comparative virology approach to investigate virus-mediated hypovirulence of the chestnut blight fungus Cryphonectria parasitica. J Virol 73, 985-992. [PubMed]

Chiba, S., Jamal, A. & N., S. (2018). First evidence for internal ribosomal entry sites in diverse fungal virus genomes. mBio (in press) doi:10.1128/mBio.02350-02317.

Choi, G. H., Pawlyk, D. M. & Nuss, D. L. (1991a). The autocatalytic protease p29 encoded by a hypovirulence-associated virus of the chestnut blight fungus resembles the potyvirus-encoded protease HC-Pro. Virology 183, 747-752. [PubMed]

Choi, G. H., Shapira, R. & Nuss, D. L. (1991b). Cotranslational autoproteolysis involved in gene expression from a double-stranded RNA genetic element associated with hypovirulence of the chestnut blight fungus. Proc Natl Acad Sci USA 88, 1167-1171. [PubMed]

Craven, M. G., Pawlyk, D. M., Choi, G. H. & Nuss, D. L. (1993). Papain-like protease p29 as a symptom determinant encoded by a hypovirulence-associated virus of the chestnut blight fungus. J Virol 67, 6513-6521. [PubMed]

Deakin, G., Dobbs, E., Bennett, J. M., Jones, I. M., Grogan, H. M. & Burton, K. S. (2017). Multiple viral infections in Agaricus bisporus - Characterisation of 18 unique RNA viruses and 8 ORFans identified by deep sequencing. Sci Rep 7, 2469. [PubMed]

Dodds, J. A. (1980). Association of type 1 viral-like dsRNA with club-shaped particles in hypovirulent strains of Endothia parasitica. Virology 107, 1-12. [PubMed]

Du, Y., Lin, Y., Zhou, X., Wang, K., Fang, S. & Deng, Q. (2017). Full-length sequence and genome analysis of CHV1-CN280, a North China isolate of cryphonectria hypovirus 1. Arch Virol 162, 1811-1818. [PubMed]

Fahima, T., Kazmierczak, P., Hansen, D. R., Pfeiffer, P. & Van Alfen, N. K. (1993). Membrane-associated replication of an unencapsidated double-strand RNA of the fungus, Cryphonectria parasitica. Virology 195, 81-89. [PubMed]

Fahima, T., Wu, Y., Zhang, L. & Van Alfen, N. K. (1994). Identification of the putative RNA polymerase of Cryphonectria hypovirus in a solubilized replication complex. J Virol 68, 6116-6119. [PubMed]

Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59, 307-321. [PubMed]

Guo, L. H., Sun, L., Chiba, S., Araki, H. & Suzuki, N. (2009). Coupled termination/reinitiation for translation of the downstream open reading frame B of the prototypic hypovirus CHV1-EP713. Nucleic Acids Res 37, 3645-3659. [PubMed]

Hansen, D. R., Van Alfen, N. K., Gillies, K. & Powell, W. A. (1985). Naked dsRNA associated with hypovirulence of Endothia parasitica is packaged in fungal vesicles. J Gen Virol 66, 2605-2614.

Hillman, B. I., Halpern, B. T. & Brown, M. P. (1994). A viral dsRNA element of the chestnut blight fungus with a distinct genetic organization. Virology 201, 241-250. [PubMed]

Hillman, B. I. & Suzuki, N. (2004). Viruses of the chestnut blight fungus, Cryphonectria parasitica. Adv Virus Res 63, 423-472. [PubMed]

Hiremath, S., L'Hostis, B., Ghabrial, S. A. & Rhoads, R. E. (1986). Terminal structure of hypovirulence-associated dsRNAs in the chestnut blight fungus Endothia parasitica. Nucleic Acids Res 14, 9877-9896. [PubMed

Hisano, S., Zhang, R., Faruk, M. I., Kondo, H. & Suzuki, N. (2017). A neo-virus lifestyle exhibited by a (+)ssRNA virus hosted in an unrelated dsRNA virus: Taxonomic and evolutionary considerations. Virus Res 244, 75-83. [PubMed]

Hu, Z., Wu, S., Cheng, J., Fu, Y., Jiang, D. & Xie, J. (2014). Molecular characterization of two positive-strand RNA viruses co-infecting a hypovirulent strain of Sclerotinia sclerotiorum. Virology 464-465, 450-459. [PubMed

Jensen, K. S. & Nuss, D. L. (2014). Mutagenesis of the catalytic and cleavage site residues of the hypovirus papain-like proteases p29 and p48 reveals alternative processing and contributions to optimal viral RNA accumulation. J Virol 88, 11946-11954. [PubMed]

Katoh, K., Rozewicki, J. & Yamada, K. D. (2017). MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform. [PubMed]

Khalifa, M. E. & Pearson, M. N. (2014). Characterisation of a novel hypovirus from Sclerotinia sclerotiorum potentially representing a new genus within the Hypoviridae. Virology 464-465, 441-449. [PubMed]

Koloniuk, I., El-Habbak, M. H., Petrzik, K. & Ghabrial, S. A. (2014). Complete genome sequence of a novel hypovirus infecting Phomopsis longicolla. Arch Virol 159, 1861-1863. [PubMed

Koonin, E. V., Choi, G. H., Nuss, D. L., Shapira, R. & Carrington, J. C. (1991). Evidence for common ancestry of a chestnut blight hypovirulence-associated double-stranded RNA and a group of positive-strand RNA plant viruses. Proc Natl Acad Sci USA 88, 10647-10651. [PubMed

Kwon, S. J., Lim, W. S., Park, S. H., Park, M. R. & Kim, K. H. (2007). Molecular characterization of a dsRNA mycovirus, Fusarium graminearum virus-DK21, which is phylogenetically related to hypoviruses but has a genome organization and gene expression strategy resembling those of plant potex-like viruses. Mol Cells 23, 304-315. [PubMed]

Li, P., Chen, X., He, H., Qiu, D. & Guo, L. (2017). Complete Genome Sequence of a Novel Hypovirus from the Phytopathogenic Fungus Fusarium langsethiae. Genome Announc 5. [PubMed]

Li, P., Zhang, H., Chen, X., Qiu, D. & Guo, L. (2015). Molecular characterization of a novel hypovirus from the plant pathogenic fungus Fusarium graminearum. Virology 481, 151-160. [PubMed

Lin, H., Lan, X., Liao, H., Parsley, T. B., Nuss, D. L. & Chen, B. (2007). Genome sequence, full-length infectious cDNA clone, and mapping of viral double-stranded RNA accumulation determinant of hypovirus CHV1-EP721. J Virol 81, 1813-1820. [PubMed]

Linder-Basso, D., Dynek, J. N. & Hillman, B. I. (2005). Genome analysis of Cryphonectria hypovirus 4, the most common hypovirus species in North America. Virology 337, 192-203. [PubMed]

Marzano, S. Y., Hobbs, H. A., Nelson, B. D., Hartman, G. L., Eastburn, D. M., McCoppin, N. K. & Domier, L. L. (2015). Transfection of Sclerotinia sclerotiorum with in vitro transcripts of a naturally occurring interspecific recombinant of Sclerotinia sclerotiorum hypovirus 2 significantly reduces virulence of the fungus. J Virol 89, 5060-5071. [PubMed]

Marzano, S. Y., Nelson, B. D., Ajayi-Oyetunde, O., Bradley, C. A., Hughes, T. J., Hartman, G. L., Eastburn, D. M. & Domier, L. L. (2016). Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens. J Virol 90, 6846-6863. [PubMed]

Mu, R., Romero, T. A., Hanley, K. A. & Dawe, A. L. (2011). Conserved and variable structural elements in the 5' untranslated region of two hypoviruses from the filamentous fungus Cryphonectria parasitica. Virus Res 161, 203-208. [PubMed]

Newhouse, J. R., Hoch, H. C. & MacDonald, W. L. (1983). The ultrastructure of Endothia parasitica. Comparison of a virulent with a hypovirulent isolate. Can J Botany 61, 389-399.

Newhouse, J. R., MacDonald, W. L. & Hoch, H. C. (1990). Virus-like particles in hyphae and conidia of European hypovirulent (dsRNA-containing) strains of Cryphonectria parasitica. Can J Botany 68, 90-101.

Nuss, D. L. (2011). Mycoviruses, RNA silencing, and viral RNA recombination. Adv Virus Res 80, 25-48. [PubMed]

Osaki, H., Sasaki, A., Nomiyama, K. & Tomioka, K. (2016). Multiple virus infection in a single strain of Fusarium poae shown by deep sequencing. Virus Genes 52, 835-847. [PubMed

Peever, T. L., Liu, Y. C., Wang, K., Hillman, B. I., Foglia, R. & Milgroom, M. G. (1998). Incidence and Diversity of Double-Stranded RNAs Occurring in the Chestnut Blight Fungus, Cryphonectria parasitica, in China and Japan. Phytopathology 88, 811-817. [PubMed]

Petrzik, K., Sarkisova, T., Stary, J., Koloniuk, I., Hrabakova, L. & Kubesova, O. (2016). Molecular characterization of a new monopartite dsRNA mycovirus from mycorrhizal Thelephora terrestris (Ehrh.) and its detection in soil oribatid mites (Acari: Oribatida). Virology 489, 12-19. [PubMed]

Segers, G. C., Zhang, X., Deng, F., Sun, Q. & Nuss, D. L. (2007). Evidence that RNA silencing functions as an antiviral defense mechanism in fungi. Proc Natl Acad Sci USA 104, 12902-12906. [PubMed]

Shapira, R., Choi, G. H., Hillman, B. I. & Nuss, D. L. (1991a). The contribution of defective RNAs to the complexity of viral-encoded double-stranded RNA populations present in hypovirulent strains of the chestnut blight fungus Cryphonectria parasitica. EMBO J 10, 741-746. [PubMed

Shapira, R., Choi, G. H. & Nuss, D. L. (1991b). Virus-like genetic organization and expression strategy for a double-stranded RNA genetic element associated with biological control of chestnut blight. EMBO J 10, 731-739. [PubMed]

Shapira, R. & Nuss, D. L. (1991). Gene expression by a hypovirulence-associated virus of the chestnut blight fungus involves two papain-like protease activities. Essential residues and cleavage site requirements for p48 autoproteolysis. J Biol Chem 266, 19419-19425. [PubMed]

Smart, C. D., Yuan, W., Foglia, R., Nuss, D. L., Fulbright, D. W. & Hillman, B. I. (1999). Cryphonectria hypovirus 3, a virus species in the family Hypoviridae with a single open reading frame. Virology 265, 66-73. [PubMed]

Sun, L. & Suzuki, N. (2008). Intragenic rearrangements of a mycoreovirus induced by the multifunctional protein p29 encoded by the prototypic hypovirus CHV1-EP713. RNA 14, 2557-2571. [PubMed]

Sun, Q., Choi, G. H. & Nuss, D. L. (2009). A single Argonaute gene is required for induction of RNA silencing antiviral defense and promotes viral RNA recombination. Proc Natl Acad Sci USA 106, 17927-17932. [PubMed]

Suzuki, N., Geletka, L. M. & Nuss, D. L. (2000). Essential and dispensable virus-encoded replication elements revealed by efforts To develop hypoviruses as gene expression vectors. J Virol 74, 7568-7577. [PubMed]

Suzuki, N., Maruyama, K., Moriyama, M. & Nuss, D. L. (2003). Hypovirus papain-like protease p29 functions in trans to enhance viral double-stranded RNA accumulation and vertical transmission. J Virol 77, 11697-11707. [PubMed]

Suzuki, N. & Nuss, D. L. (2002). Contribution of protein p40 to hypovirus-mediated modulation of fungal host phenotype and viral RNA accumulation. J Virol 76, 7747-7759. [PubMed]

Talavera, G. & Castresana, J. (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56, 564-577. [PubMed]

Tartaglia, J., Paul, C. P., Fulbright, D. W. & Nuss, D. L. (1986). Structural properties of double-stranded RNAs associated with biological control of chestnut blight fungus. Proc Natl Acad Sci USA 83, 9109-9113. [PubMed]

Wang, S., Kondo, H., Liu, L., Guo, L. & Qiu, D. (2013). A novel virus in the family Hypoviridae from the plant pathogenic fungus Fusarium graminearum. Virus Res 174, 69-77. [PubMed]

Xie, J., Xiao, X., Fu, Y., Liu, H., Cheng, J., Ghabrial, S. A., Li, G. & Jiang, D. (2011). A novel mycovirus closely related to hypoviruses that infects the plant pathogenic fungus Sclerotinia sclerotiorum. Virology 418, 49-56. [PubMed]

Yaegashi, H., Kanematsu, S. & Ito, T. (2012). Molecular characterization of a new hypovirus infecting a phytopathogenic fungus, Valsa ceratosperma. Virus Res 165, 143-150. [PubMed]

Yuan, W. & Hillman, B. I. (2001). In vitro translational analysis of genomic, defective, and satellite RNAs of Cryphonectria hypovirus 3-GH2. Virology 281, 117-123. [PubMed]

Zhang, R., Liu, S., Chiba, S., Kondo, H., Kanematsu, S. & Suzuki, N. (2014). A novel single-stranded RNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix, with similarity to hypo-like viruses. Front Microbiol 5, 360. [PubMed]

Zhang, X. & Nuss, D. L. (2008). A host dicer is required for defective viral RNA production and recombinant virus vector RNA instability for a positive sense RNA virus. Proc Natl Acad Sci USA 105, 16749-16754. [PubMed]

Zhang, X., Segers, G. C., Sun, Q., Deng, F. & Nuss, D. L. (2008). Characterization of hypovirus-derived small RNAs generated in the chestnut blight fungus by an inducible DCL-2-dependent pathway. J Virol 82, 2613-2619. [PubMed]