References: Caliciviridae


References: Caliciviridae

Abrantes, J., van der Loo, W., Le Pendu, J. & Esteves, P. J. (2012). Rabbit haemorrhagic disease (RHD) and rabbit haemorrhagic disease virus (RHDV): a review. Vet Res 43, 12. [PubMed]

Alkan, F., Karayel, İ., Catella, C., Bodnar, L., Lanave, G., Bányai, K., Di Martino, B., Decaro, N., Buonavoglia, C. & Martella, V. (2015). Identification of a bovine enteric calicivirus, Kirklareli virus, distantly related to neboviruses, in calves with enteritis in Turkey. J Clin Microbiol 53, 3614-3617. [PubMed]

Asanaka, M., Atmar, R. L., Ruvolo, V., Crawford, S. E., Neill, F. H. & Estes, M. K. (2005). Replication and packaging of Norwalk virus RNA in cultured mammalian cells. Proc Natl Acad Sci USA 102, 10327-10332. [PubMed]

Atmar, R. L., Bernstein, D. I., Harro, C. D., Al-Ibrahim, M. S., Chen, W. H., Ferreira, J., Estes, M. K., Graham, D. Y., Opekun, A. R., Richardson, C. & Mendelman, P. M. (2011). Norovirus vaccine against experimental human Norwalk Virus illness. New Engl J Med 365, 2178-2187. [PubMed]

Bull, R. A., Tanaka, M. M. & White, P. A. (2007). Norovirus recombination. J Gen Virol 88, 3347-3359. [PubMed]

Chang, K. O., Sosnovtsev, S. V., Belliot, G., Kim, Y., Saif, L. J. & Green, K. Y. (2004). Bile acids are essential for porcine enteric calicivirus replication in association with down-regulation of signal transducer and activator of transcription 1. Proc Natl Acad Sci USA 101, 8733-8738. [PubMed]

Chhabra, P., de Graaf, M., Parra, G. I., Chan M C-W., Green, K. Y., Martella, V., Wang, Q., White, P. A., Katayama, K., Vennema, H., Koopmans, M. P. G. & Vinjé, J. (2019). Updated classification of norovirus genogroups and genotypes. J Gen Virol in press.

Day, J. M., Ballard, L. L., Duke, M. V., Scheffler, B. E. & Zsak, L. (2010). Metagenomic analysis of the turkey gut RNA virus community. Virol J 7, 313. [PubMed] 

Ettayebi, K., Crawford, S. E., Murakami, K., Broughman, J. R., Karandikar, U., Tenge, V. R., Neill, F. H., Blutt, S. E., Zeng, X. L., Qu, L., Kou, B., Opekun, A. R., Burrin, D., Graham, D. Y., Ramani, S., Atmar, R. L. & Estes, M. K. (2016). Replication of human noroviruses in stem cell-derived human enteroids. Science 353, 1387-1393. [PubMed]

Farkas, T., Sestak, K., Wei, C. & Jiang, X. (2008). Characterization of a rhesus monkey calicivirus representing a new genus of Caliciviridae. J Virol 82, 5408-5416. [PubMed]

Green, K. (2013). Calicivirdae; the noroviruses. In Fields virology, 6th ed, pp. 583–609. Edited by D. M. Knipe, P. M. Howley, J. I. Cohen, D. E. Griffin, R. A. Lamb, M. A. Martin, V. R. Racaniello & B. Roizman. Philadelphia, PA: Lippincott Williams & Wilkins.  

Guo, H., Zhu, J., Tan, Y., Li, C., Chen, Z., Sun, S. & Liu, G. (2016). Self-assembly of virus-like particles of rabbit hemorrhagic disease virus capsid protein expressed in Escherichia coli and their immunogenicity in rabbits. Antiviral Res 131, 85-91. [PubMed]

Hurley, K. E., Pesavento, P. A., Pedersen, N. C., Poland, A. M., Wilson, E. & Foley, J. E. (2004). An outbreak of virulent systemic feline calicivirus disease. J Am Vet Med Assoc 224, 241-249. [PubMed]

Karst, S. M., Wobus, C. E., Goodfellow, I. G., Green, K. Y. & Virgin, H. W. (2014). Advances in norovirus biology. Cell Host Microbe 15, 668-680. [PubMed]

Kim, L., Liebowitz, D., Lin, K., Kasparek, K., Pasetti, M. F., Garg, S. J., Gottlieb, K., Trager, G. & Tucker, S. N. (2018). Safety and immunogenicity of an oral tablet norovirus vaccine, a phase I randomized, placebo-controlled trial. JCI insight 3. [PubMed]

Kroneman, A., Vega, E., Vennema, H., Vinjé, J., White, P. A., Hansman, G., Green, K., Martella, V., Katayama, K. & Koopmans, M. (2013). Proposal for a unified norovirus nomenclature and genotyping. Arch Virol 158, 2059-2068. [PubMed]

Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol 35, 1547-1549. [PubMed] 

Kumar, S., Stecher, G. & Tamura, K. (2016). MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol 33, 1870-1874. [PubMed]

L'Homme, Y., Sansregret, R., Plante-Fortier, E., Lamontagne, A. M., Ouardani, M., Lacroix, G. & Simard, C. (2009). Genomic characterization of swine caliciviruses representing a new genus of Caliciviridae. Virus Genes 39, 66-75. [PubMed]

Le Pendu, J., Abrantes, J., Bertagnoli, S., Guitton, J. S., Le Gall-Reculé, G., Lopes, A. M., Marchandeau, S., Alda, F., Almeida, T., Célio, A. P., Bárcena , J., Burmakina, G., Blanco, E., Calvete, C., Cavadini, P., Cooke, B., Dalton, K., Delibes Mateos, M., Deptula, W., Eden, J. S., Wang, F., Ferreira, C. C., Ferreira, P., Foronda, P., Gonçalves, D., Gavier-Widén, D., Hall, R., Hukowska-Szematowicz, B., Kerr, P., Kovaliski, J., Lavazza, A., Mahar, J., Malogolovkin, A., Marques, R. M., Marques, S., Martin-Alonso, A., Monterroso, P., Moreno, S., Mutze, G., Neimanis, A., Niedzwiedzka-Rystwej, P., Peacock, D., Parra, F., Rocchi, M., Rouco, C., Ruvoën-Clouet, N., Silva, E., Silvério, D., Strive, T., Thompson, G., Tokarz-Deptula, B. & Esteves, P. (2017). Proposal for a unified classification system and nomenclature of lagoviruses. J Gen Virol 98, 1658-1666. [PubMed]

Liao, Q., Wang, X., Wang, D. & Zhang, D. (2014). Complete genome sequence of a novel calicivirus from a goose. Arch Virol 159, 2529-2531. [PubMed]

Liu, B. L., Clarke, I. N., Caul, E. O. & Lambden, P. R. (1995). Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses. Arch Virol 140, 1345-1356. [PubMed]

McFadden, N., Bailey, D., Carrara, G., Benson, A., Chaudhry, Y., Shortland, A., Heeney, J., Yarovinsky, F., Simmonds, P., Macdonald, A. & Goodfellow, I. (2011). Norovirus regulation of the innate immune response and apoptosis occurs via the product of the alternative open reading frame 4. PLoS Pathog 7, e1002413. [PubMed]

Mikalsen, A. B., Nilsen, P., Frøystad-Saugen, M., Lindmo, K., Eliassen, T. M., Rode, M. & Evensen, O. (2014). Characterization of a novel calicivirus causing systemic infection in atlantic salmon (Salmo salar L.): proposal for a new genus of Caliciviridae. PLoS One 9, e107132. [PubMed]

Mor, S. K., Phelps, N. B. D., Ng, T. F. F., Subramaniam, K., Primus, A., Armien, A. G., McCann, R., Puzach, C., Waltzek, T. B. & Goyal, S. M. (2017). Genomic characterization of a novel calicivirus, FHMCV-2012, from baitfish in the USA. Arch Virol 162, 3619-3627. [PubMed]

Napthine, S., Lever, R. A., Powell, M. L., Jackson, R. J., Brown, T. D. & Brierley, I. (2009). Expression of the VP2 protein of murine norovirus by a translation termination-reinitiation strategy. PLoS One 4, e8390. [PubMed] 

Neill, J. D. (2014). The complete genome sequence of the San Miguel sea lion virus-8 reveals that it is not a member of the vesicular exanthema of swine virus/San Miguel sea lion virus species of the Caliciviridae. Genome Announc 2. [PubMed]

Neill, J. D., Meyer, R. F. & Seal, B. S. (1995). Genetic relatedness of the caliciviruses: San Miguel sea lion and vesicular exanthema of swine viruses constitute a single genotype within the Caliciviridae. J Virol 69, 4484-4488. [PubMed] 

Oka, T., Wang, Q., Katayama, K. & Saif, L. J. (2015). Comprehensive review of human sapoviruses. Clin Microbiol Rev 28, 32-53. [PubMed]

Oliver, S. L., Asobayire, E., Dastjerdi, A. M. & Bridger, J. C. (2006). Genomic characterization of the unclassified bovine enteric virus Newbury agent-1 (Newbury1) endorses a new genus in the family Caliciviridae. Virology 350, 240-250. [PubMed]

Prasad, B. V., Hardy, M. E., Dokland, T., Bella, J., Rossmann, M. G. & Estes, M. K. (1999). X-ray crystallographic structure of the Norwalk virus capsid. Science 286, 287-290. [PubMed]

Santiana, M., Ghosh, S., Ho, B. A., Rajasekaran, V., Du, W. L., Mutsafi, Y., De Jésus-Diaz, D. A., Sosnovtsev, S. V., Levenson, E. A., Parra, G. I., Takvorian, P. M., Cali, A., Bleck, C., Vlasova, A. N., Saif, L. J., Patton, J. T., Lopalco, P., Corcelli, A., Green, K. Y. & Altan-Bonnet, N. (2018). Vesicle-cloaked virus clusters are optimal units for inter-organismal viral transmission. Cell Host Microbe 24, 208-220.e208. [PubMed] 

Shi, M., Lin, X.-D., Chen, X., Tian, J.-H., Chen, L.-J., Li, K., Wang, W., Eden, J.-S., Shen, J.-J., Liu, L., Holmes, E. C. & Zhang, Y.-Z. (2018). The evolutionary history of vertebrate RNA viruses. Nature 556, 197-202. [PubMed]

Smiley, J. R., Chang, K. O., Hayes, J., Vinjé, J. & Saif, L. J. (2002). Characterization of an enteropathogenic bovine calicivirus representing a potentially new calicivirus genus. J Virol 76, 10089-10098. [PubMed]

Smith, A. W., Skilling, D. E., Cherry, N., Mead, J. H. & Matson, D. O. (1998). Calicivirus emergence from ocean reservoirs: zoonotic and interspecies movements. Emerg Infect Dis 4, 13-20. [PubMed] 

Smits, S. L., Rahman, M., Schapendonk, C. M., van Leeuwen, M., Faruque, A. S., Haagmans, B. L., Endtz, H. P. & Osterhaus, A. D. (2012). Calicivirus from novel Recovirus genogroup in human diarrhea, Bangladesh. Emerg Infect Dis 18, 1192-1195. [PubMed]

Sosnovtsev, S. V. & Green, K. Y. (2000). Identification and genomic mapping of the ORF3 and VPg proteins in feline calicivirus virions. Virology 277, 193-203. [PubMed]

Sosnovtsev, S. V., Sosnovtseva, S. A. & Green, K. Y. (1998). Cleavage of the feline calicivirus capsid precursor is mediated by a virus-encoded proteinase. J Virol 72, 3051-3059. [PubMed] 

Wang, F., Wang, M., Dong, Y., Zhang, B. & Zhang, D. (2017). Genetic characterization of a novel calicivirus from a goose. Arch Virol 162, 2115-2118. [PubMed]

Wille, M., Eden, J. S., Shi, M., Klaassen, M., Hurt, A. C. & Holmes, E. C. (2018). Virus-virus interactions and host ecology are associated with RNA virome structure in wild birds. Mol Ecol 27, 5263-5278. [PubMed]

Wirblich, C., Meyers, G., Ohlinger, V. F., Capucci, L., Eskens, U., Haas, B. & Thiel, H. J. (1994). European brown hare syndrome virus: relationship to rabbit hemorrhagic disease virus and other caliciviruses. J Virol 68, 5164-5173. [PubMed]

Wolf, S., Reetz, J., Hoffmann, K., Gründel, A., Schwarz, B. A., Hänel, I. & Otto, P. H. (2012). Discovery and genetic characterization of novel caliciviruses in German and Dutch poultry. Arch Virol 157, 1499-1507. [PubMed]

Wolf, S., Reetz, J. & Otto, P. (2011). Genetic characterization of a novel calicivirus from a chicken. Arch Virol 156, 1143-1150. [PubMed]

Wu, Z., Yang, L., Ren, X., He, G., Zhang, J., Yang, J., Qian, Z., Dong, J., Sun, L., Zhu, Y., Du, J., Yang, F., Zhang, S. & Jin, Q. (2016). Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. The ISME journal 10, 609-620. [PubMed] 

Yinda, C. K., Conceição-Neto, N., Zeller, M., Heylen, E., Maes, P., Ghogomu, S. M., Van Ranst, M. & Matthijnssens, J. (2017). Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon. Emerg Microbes Infect 6, e38. [PubMed]

Zhu, J., Miao, Q., Tan, Y., Guo, H., Liu, T., Wang, B., Chen, Z., Li, C. & Liu, G. (2017). Inclusion of an Arg-Gly-Asp receptor-recognition motif into the capsid protein of rabbit hemorrhagic disease virus enables culture of the virus in vitro. J Biol Chem 292, 8605-8615. [PubMed]