Unassigned species

Unassigned species


Strawberry mottle virus, black raspberry virus and chocolate lily virus A are related to satsuma dwarf virus (SDV) in phylogenetic trees using the conserved Pro-Pol region (Figure 4.Secoviridae). Dioscorea mosaic associated virus, recently isolated from yam, is most closely related to chocolate lily virus A (Hayashi et al., 2016). These viruses also have a bipartite genome. However, the nature of their capsid protein(s) and their genomic organization are not known. For this reason, they are unassigned species in the family Secoviridae. Strawberry latent ringspot virus was formerly considered a sadwavirus because it has two capsid proteins (CP) and some distant relation with SDV in phylogenetic trees using the Pro-Pol sequence (Figure 4.Secoviridae). However, its genomic organization is more related to that of cheraviruses (with the exception of the number of CPs, Figure 3.Secoviridae) and it branches more closely with cheraviruses than with sadwaviruses in the phylogenetic trees using the Pro-Pol sequence (Figure 4.Secoviridae). For these reasons, it is not considered a sadwavirus anymore, and is now an unassigned species in the family Secoviridae.

Unassigned species in family Secoviridae

Exemplar isolate of the species
SpeciesVirus nameIsolateAccession numberRefSeq numberAvailable sequenceVirus Abbrev.
Black raspberry necrosis virusblack raspberry necrosis virus1RNA-1: DQ344639; RNA-2: DQ344640RNA-1: NC_008182; RNA-2: NC_008183Complete genomeBRNV
Chocolate lily virus Achocolate lily virus AKP2RNA-1: JN052073; RNA-2: JN052074RNA-1: NC_016443; RNA-2: NC_016444Complete coding genomeCLVA
Dioscorea mosaic associated virusDioscorea mosaic associated virusgoianaRNA-1: KU215538; RNA-2: KU215539RNA-1: NC_031766; RNA-2: NC_031763Complete genomeDMaV
Strawberry latent ringspot virusstrawberry latent ringspot virusNCGR MEN 454.001RNA-1: AY860978; RNA-2: AY860979RNA-1: NC_006964; RNA-2: NC_006965Complete genomeSLRSV
Strawberry mottle virusstrawberry mottle virusThompsonRNA-1: AJ311875; RNA-2: AJ311876RNA-1: NC_003445; RNA-2: NC_003446Complete genomeSMoV

Virus names, the choice of exemplar isolates, and virus abbreviations, are not official ICTV designations.