Artoviridae

Artoviridae

Ralf G. Dietzgen, Dàohóng Jiāng, Jens H. Kuhn and Nikos Vasilakis

The citation for this ICTV Report chapter is the summary published as Dietzgen et al., (2019):
ICTV Virus Taxonomy Profile: ArtoviridaeJournal of General Virology, 100, 1202–1203.

Corresponding author: Ralf G. Dietzgen (r.dietzgen@uq.edu.au)
Edited by: Jens H. Kuhn and Stuart G. Siddell
Posted: June 2019, updated June 2020

Summary

The family Artoviridae was created in 2018 for the established monospecific genus Peropuvirus and six new species for invertebrate viruses all discovered by high throughput sequencing (Li et al., 2015, Shi et al., 2016). A second genus, Hexartovirus, including two species for viruses of sea lice (Økland et al., 2019) and barnacles (Shi et al., 2016) respectively was added in 2020. Artoviruses form a family in the haploviricotine order Mononegavirales (Amarasinghe et al., 2019).

Table 1.Artoviridae. Characteristics of members of the family Artoviridae.

Characteristic

Description

Typical member

Pteromalus puparum negative-strand RNA virus 1 (KX431032), species Pteromalus puparum peropuvirus, genus Peropuvirus

Virion

Enveloped, spherical particles, 100–130 nm in diameter

Genome

Negative-sense, unsegmented RNA of approximately 12 kb

Replication

Nuclear: the RNA-directed RNA polymerase engages with the ribonucleoprotein complex at the genome’s 3′-end

Translation

Individual, putatively polyadenylated, mRNAs are translated in the cytoplasm

Host Range

Barnacles, copepods, odonates, parasitoid wasps, pillworms, woodlice

Taxonomy

Realm Riboviria, kingdom Orthornavirnae, phylum Negarnaviricota, subphylum Haploviricotina, class Monjiviricetes, order Mononegavirales. Genus Peropuvirus includes 6 species and genus Hexartovirus includes 2 species.

Virion

Morphology

Virions of Pteromalus puparum negative-strand RNA virus 1 (PpNSRV-1) are enveloped and spherical with a diameter of 100–130 nm (Figure 1.Artoviridae). Virion morphology and structure is not available for other artoviruses, which are only known from genomic sequence data.

Figure 1.Artoviridae. Electron micrographs of purified PpNSRV-1 particles from follicular cells. (A) Electron micrographs of purified PpNSRV-1 virions. (B) and (C) are the magnification pictures. Red arrows indicate viral particles. From (Wang et al., 2017), figure S3.

Spherically shaped PpNSRV-1 particles are present in follicular cells of the ovaries of infected parasitoid wasps (Figure 1.Artoviridae). Similarly, virion-like particles stacked in intracellular vesicles have been observed in cells of the digestive tract. The spherical particles of PpNSRV-1 are similar to particles produced by nyamiviruses (Wang et al., 2017, Dietzgen et al., 2017).

Physicochemical and physical properties

None reported.

Nucleic acid

Unsegmented, single-stranded RNA genome of 11–12.5 kb.

Proteins

Artoviruses encode up to 5 structural proteins. Among them are the nucleocapsid protein (N), glycoprotein (G) and RNA-directed RNA polymerase (RdRP) domain-containing large protein (L) that are identified based on sequence similarity and structural properties shared with mononegavirus homologues. The functions of the other encoded proteins are largely unknown and likely are those of matrix and polymerase cofactor proteins. 

The amino acid sequence of the PpNSRV-1 L protein is 26% identical to that of Midway virus (MIDWV, Nyamiviridae). The PpNSRV-1 ORF IV protein contains 7 potential O-linked and 4 potential N-linked glycosylation sites and 29 potential phosphorylation sites, suggesting that ORF IV may encode the viral glycoprotein G. The U1 protein is predicted to have 37 potential phosphorylation sites, whereas the U2 protein has 9 potential phosphorylation sites. The U3 protein contains 37 potential O-linked glycosylation sites. Thus, U3 may encode a glycosylated matrix protein M and U1 may encode the viral nucleoprotein N. Based on the conserved genomic organization of mononegaviruses, U2 is suggested to encode a phosphoprotein (P) (Wang et al., 2017).

Lipids

None reported.

Carbohydrates

None reported. 

Genome organization and replication

Artovirus single-stranded RNA genomes are up to 12.5 kb (Figure 2.Artoviridae). All known artoviruses have unsegmented genomes. The number of open reading frames (ORFs) varies. Genomes usually encode hypothetical proteins of unknown function (U1, U2 and U3), a putative glycoprotein (G) protein and a large protein (L) encoding an RNA-directed RNA polymerase domain: in the gene order 3'-U1-U2-U3-(G)-L-5'. The complete L gene sequences for all known members are known. Knowledge of artovirus replication is limited.

The PpNSRV-1 genome contains five large independently-transcribed, non-overlapping ORFs flanked by 3′-leader and 5′-trailer regions whose terminal nucleotides do not exhibit obvious complementarity. Typical conserved transcription initiation and termination motifs are identified upstream and downstream, respectively, of each putative ORF.

Figure 2.Artoviridae. Artovirus genome organization. Some virus genome sequences may be incomplete.

Biology

Members of the genus Peropuvirus infect parasitoid wasps, barnacles, pillworms, woodlice odonates, or copepods. Members of the genus Hexartovirus infect sea lice (copepods) or barnacles.

PpNSRV-1 was originally isolated from a laboratory parasitoid strain of a pteromalid wasp (Pteromalus puparum Linnaeus, 1758). PpNSRV-1 is present in various tissues and life stages of the parasitoid and is transmitted vertically through females and males. PpNSRV-1 increases adult longevity and impairs several fitness parameters of the wasp but has no influence on successful parasitism. PpNSRV1 moderates the offspring sex ratio by decreasing female offspring numbers (Wang et al., 2017).

Lepeophtheirus salmonis negative-strand RNA virus 1 (LsNSRV-1) was detected in salmon lice (Lepeophtheirus salmonis Kroger, 1837) infecting farmed Atlantic salmon (Salmo salar Linnaeus, 1758) in Norway. LsNSRV-1 was present in various tissues of male and female salmon lice and was detected in all developmental stages. Viral RNA was detected in both the cytoplasm and nucleoli of infected cells (Økland et al., 2019).

Derivation of names

Arto: from arthropod

Peropu: from Pteromalus puparum, the species to which the pteromalid wasp belongs, from which the family’s typical member, PpNSRV-1, was first isolated.

Hexarto: from the crustacean class Hexanauplia and artovirus.

Caligid: member of the Caligidae (sea lice)

Relationships within the family

Phylogenetic relationships between the RdRP amino acid sequences of artoviruses and members of related mononegavirus families are shown in Figure 3.Artoviridae.

Figure 3. Artoviridae. Phylogenetic maximum likelihood tree of members of the family Artoviridae. Artoviruses are classified in the two genera Peropuvirus and Hexartovirus based on RdRP domain amino acid sequences. Viruses of the two genera form monophyletic clades. Representative members of related mononegavirus families are included for comparison. The ML tree was produced using an LG + G + I model in MEGA7 (Kumar et al., 2016). This phylogenetic tree and corresponding sequence alignment are available to download from the Resources page.

Relationships with other taxa

Members of the family Artoviridae are phylogenetically most closely related to members of the families Bornaviridae, Lispiviridae, Mymonaviridae, and Nyamiviridae (Figure 3.Artoviridae).

Member taxa