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Genus: Gammapapillomavirus

Genus: Gammapapillomavirus

Distinguishing features

Members of this genus are typically found on the skin and oral mucosa of primates. Infections are usually asymptomatic. However, some infections cause cutaneous lesions in their host and are histologically distinguishable by intracytoplasmic inclusion bodies. The members of the species Gammapapillomavirus 6 do not contain an E6 ORF, but encode a putative E10 protein in the same location.

Virion

See discussion under family description. 

Genome organization and replication

See discussion under family description.

Biology

See discussion under family description.

Species demarcation criteria

Putative novel papillomavirus genome with complete genome sequence data available and that is <70% related to papillomaviruses within the genus (Figure 1.Gammapapillomavirus).

Figure 1.Gammapapillomavirus. Phylogenetic tree of members of the genus Gammapapillomavirus. The E1, E2, L2, and L1 nucleotide sequences of 343 papillomavirus isolates including representatives of all species and genera within the Papillomaviridae family were aligned as amino acid sequences using MUSCLE v7.221 (Edgar 2004). JModeltest2 (Darriba et al., 2012) was used to determine the optimal model of evolution (GTR + I + G) for the concatenated nucleotide sequences. Maximum likelihood (ML) trees were constructed using RAxML MPI v8.2.9 (Stamatakis 2006) implementing the GTR substitution model. ML bootstrap analysis used the autoMRE-based stopping criterion in RAxML. Following tree construction (tree available in the Resources section of the Papillomaviridae Report), the subtree corresponding to the genus Gammapapillomavirus was isolated. Tips are labelled with virus names and accession numbers; nodes are labelled with bootstrap support values.

Member species

Exemplar isolate of the species
SpeciesVirus nameIsolateAccession numberRefSeq numberAvailable sequenceVirus Abbrev.
Gammapapillomavirus 1human papillomavirus 4X70827NC_001457Complete genomeHPV4
Gammapapillomavirus 1human papillomavirus 95AJ620210Complete genomeHPV95
Gammapapillomavirus 1human papillomavirus 173KF006400Complete genomeHPV173
Gammapapillomavirus 1human papillomavirus 205EP01KT698167Complete genomeHPV205
Gammapapillomavirus 1human papillomavirus 65X70829Complete genomeHPV65
Gammapapillomavirus 2human papillomavirus 48U31789NC_001690Complete genomeHPV48
Gammapapillomavirus 2human papillomavirus 200KP692114Complete genomeHPV200
Gammapapillomavirus 3human papillomavirus 50U31790NC_001691Complete genomeHPV50
Gammapapillomavirus 4human papillomavirus 60U31792NC_001693Complete genomeHPV60
Gammapapillomavirus 5human papillomavirus 88EF467176NC_010329Complete genomeHPV88
Gammapapillomavirus 6human papillomavirus 101Qv23954DQ080081NC_008189Complete genomeHPV101
Gammapapillomavirus 6human papillomavirus 103QV33725DQ080078Complete genomeHPV103
Gammapapillomavirus 6human papillomavirus 108FM212639Complete genomeHPV108
Gammapapillomavirus 7human papillomavirus 109EU541441NC_012485Complete genomeHPV109
Gammapapillomavirus 7human papillomavirus 123NJ2501GQ845445Complete genomeHPV123
Gammapapillomavirus 7human papillomavirus 14943374GU117629Complete genomeHPV149
Gammapapillomavirus 7human papillomavirus 13439-65GU117634Complete genomeHPV134
Gammapapillomavirus 7human papillomavirus 138GH13HM999990Complete genomeHPV138
Gammapapillomavirus 7human papillomavirus 139GH1646HM999991Complete genomeHPV139
Gammapapillomavirus 7human papillomavirus 155SE42JF906559Complete genomeHPV155
Gammapapillomavirus 7human papillomavirus 170KC8JX413110Complete genomeHPV170
Gammapapillomavirus 8human papillomavirus 112EU541442NC_012486Complete genomeHPV112
Gammapapillomavirus 8human papillomavirus 119CL3647GQ845441Complete genomeHPV119
Gammapapillomavirus 8human papillomavirus 147GH659HM999999Complete genomeHPV147
Gammapapillomavirus 8human papillomavirus 164KC4JX413106Complete genomeHPV164
Gammapapillomavirus 8human papillomavirus 168KC15KC862317Complete genomeHPV168
Gammapapillomavirus 9human papillomavirus 116FJ804072NC_013035Complete genomeHPV116
Gammapapillomavirus 9human papillomavirus 129GU233853Complete genomeHPV129
Gammapapillomavirus 10human papillomavirus 121NJ3301GQ845443NC_014185Complete genomeHPV121
Gammapapillomavirus 10human papillomavirus 13024-43GU117630Complete genomeHPV130
Gammapapillomavirus 10human papillomavirus 13328-52GU117633Complete genomeHPV133
Gammapapillomavirus 10human papillomavirus 142GH1302HM999994Complete genomeHPV142
Gammapapillomavirus 10human papillomavirus 180FA69KC108722Complete genomeHPV180
Gammapapillomavirus 11human papillomavirus 126AB646346NC_016157Complete genomeHPV126
Gammapapillomavirus 11human papillomavirus 136CL3865HM999988Complete genomeHPV136
Gammapapillomavirus 11human papillomavirus 140NJ2801C1HM999992Complete genomeHPV140
Gammapapillomavirus 11human papillomavirus 141NJ2801CnHM999993Complete genomeHPV141
Gammapapillomavirus 11human papillomavirus 154PV77JN211193Complete genomeHPV154
Gammapapillomavirus 11human papillomavirus 169KC6JX413105Complete genomeHPV169
Gammapapillomavirus 11human papillomavirus 171KF006398Complete genomeHPV171
Gammapapillomavirus 11human papillomavirus 202KP692116Complete genomeHPV202
Gammapapillomavirus 12human papillomavirus 127R3aHM011570NC_014469Complete genomeHPV127
Gammapapillomavirus 12human papillomavirus 157GC08KT698166Complete genomeHPV157
Gammapapillomavirus 12human papillomavirus 13227-50GU117632Complete genomeHPV132
Gammapapillomavirus 12human papillomavirus 14834-60GU129016Complete genomeHPV148
Gammapapillomavirus 12human papillomavirus 165KC7JX444072Complete genomeHPV165
Gammapapillomavirus 12human papillomavirus 199KC82-SLOKJ913662Complete genomeHPV199
Gammapapillomavirus 12human papillomavirus 158GC23KT698168Complete genomeHPV158
Gammapapillomavirus 13human papillomavirus 128GU225708NC_014952Complete genomeHPV128
Gammapapillomavirus 13human papillomavirus 153JN171845Complete genomeHPV153
Gammapapillomavirus 14human papillomavirus 13127-49GU117631NC_014954Complete genomeHPV131
Gammapapillomavirus 15human papillomavirus 135NJ3500HM999987NC_017993Complete genomeHPV135
Gammapapillomavirus 15human papillomavirus 179SIBX16HG421739Complete genomeHPV179
Gammapapillomavirus 15human papillomavirus 146GH1677HM999998Complete genomeHPV146
Gammapapillomavirus 16human papillomavirus 137NJ2801HHM999989NC_017995Complete genomeHPV137
Gammapapillomavirus 17human papillomavirus 144CL3740HM999996NC_017997Complete genomeHPV144
Gammapapillomavirus 18human papillomavirus 156GC01JX429973NC_033781Complete genomeHPV156
Gammapapillomavirus 19human papillomavirus 161KC1JX413109NC_038522Complete genomeHPV161
Gammapapillomavirus 19human papillomavirus 166KC9JX413104Complete genomeHPV166
Gammapapillomavirus 19human papillomavirus 162KC2JX413108Complete genomeHPV162
Gammapapillomavirus 20human papillomavirus 163KC3JX413107NC_028125Complete genomeHPV163
Gammapapillomavirus 21human papillomavirus 167KC10KC862318NC_022892Complete genomeHPV167
Gammapapillomavirus 22human papillomavirus 172KF006399NC_038523Complete genomeHPV172
Gammapapillomavirus 23human papillomavirus 175SE87KC108721NC_038524Complete genomeHPV175
Gammapapillomavirus 24human papillomavirus 178KJ130020NC_023891Complete genomeHPV178
Gammapapillomavirus 24human papillomavirus 197SE46KM085343Complete genomeHPV197
Gammapapillomavirus 25human papillomavirus 184SIBX17HG530535NC_038914Complete genomeHPV184
Gammapapillomavirus 26human papillomavirus 187ACS447KR816174NC_039086Complete genomeHPV187
Gammapapillomavirus 27human papillomavirus 201KP692115NC_027528Complete genomeHPV201

Virus names, the choice of exemplar isolates, and virus abbreviations, are not official ICTV designations.

Related, unclassified viruses

Virus name

Accession number

Virus abbreviation

human papillomavirus mCG2

JF966378

HPV-mCG2

human papillomavirus mCG3

JF966379

HPV-mCG3

human papillomavirus mCH2

KF791917

HPV-mCH2

human papillomavirus mDysk1

KX781280

HPV-mDysk1

human papillomavirus mDysk2

KX781281

HPV-mDysk2

human papillomavirus mDysk3

KX781282

HPV-mDysk3

human papillomavirus mDysk5

KX781284

HPV-mDysk5

human papillomavirus mDysk6

KX781285

HPV-mDysk6

human papillomavirus mEV03c05

MF588698

HPV-mEV03c05

human papillomavirus mEV03c104

MF588724

HPV-mEV03c104

human papillomavirus mEV03c188

MF588729

HPV-mEV03c188

human papillomavirus mEV03c212

MF588735

HPV-mEV03c212

human papillomavirus mEV03c40

MF588746

HPV-mEV03c40

human papillomavirus mEV03c434

MF588755

HPV-mEV03c434

human papillomavirus mEV03c45

MF588721

HPV-mEV03c45

human papillomavirus mEV03c60

MF588699

HPV-mEV03c60

human papillomavirus mEV06c107

MF588747

HPV-mEV06c107

human papillomavirus mEV06c118

MF588736

HPV-mEV06c118

human papillomavirus mEV07c367

MF588716

HPV-mEV07c367

human papillomavirus mEV07c382

MF588723

HPV-mEV07c382

human papillomavirus mEV07c390

MF588705

HPV-mEV07c390

human papillomavirus mFD1

JF966375

HPV-mFD1

human papillomavirus mFD2

JF966376

HPV-mFD2

human papillomavirus mFS1

JF966373

HPV-mFS1

human papillomavirus mFi864

KC311731

HPV-mFi864

human papillomavirus mHIVGc70

MF588713

HPV-mHIVGc70

human papillomavirus mICB1

MF356498

HPV-mICB1

human papillomavirus mKC5

JX444073

HPV-mKC5

human papillomavirus mKN1

JF966371

HPV-mKN1

human papillomavirus mKN2

JF966372

HPV-mKN2

human papillomavirus mKN3

JF966374

HPV-mKN3

human papillomavirus mL55

KF482069

HPV-mL55

human papillomavirus mLCOSOc196

MF588688

HPV-mLCOSOc196

human papillomavirus mMTS2

KY780961

HPV-mMTS2

human papillomavirus mSD2

KC113191

HPV-mSD2

human papillomavirus mSE355

KJ506870

HPV-mSE355

human papillomavirus mSE379

KP692117

HPV-mSE379

human papillomavirus mSE383

KP692118

HPV-mSE383

human papillomavirus mTVMBSGc529

MF588706

HPV-mTVMBSGc529

human papillomavirus mTVMBSGc2450

MF588732

HPV-mTVMBSGc2450

human papillomavirus mTVMBSHc13

MF588738

HPV-mTVMBSHc13

human papillomavirus mTVMBSHc33

MF588707

HPV-mTVMBSHc33

human papillomavirus mTVMBSWc141

MF588739

HPV-mTVMBSWc141

human papillomavirus mZJ01

KX082661

HPV-mZJ01

human papillomavirus mdo1c02

MF588734

HPV-mdo1c02

human papillomavirus mdo1c232

MF588704

HPV-mdo1c232

human papillomavirus mga2c01

MF588744

HPV-mga2c01

human papillomavirus mga2c70

MF588754

HPV-mga2c70

human papillomavirus mm090c10

MF588745

HPV-mm090c10

human papillomavirus mm090c145

MF588737

HPV-mm090c145

human papillomavirus mm090c66

MF588748

HPV-mm090c66

human papillomavirus mw02c24a

MF588696

HPV-mw02c24a

human papillomavirus mw03c65

MF588697

HPV-mw03c65

human papillomavirus mw07c34d

MF588753

HPV-mw07c34d

human papillomavirus mw07c68b

MF588717

HPV-mw07c68b

human papillomavirus mw07c74b

MF588749

HPV-mw07c74b

human papillomavirus mw11C24

MF588709

HPV-mw11C24

human papillomavirus mw11C39

MF588710

HPV-mw11C39

human papillomavirus mw11C51

MF588689

HPV-mw11C51

human papillomavirus mw11c13

MF588718

HPV-mw11c13

human papillomavirus mw18c07

MF588740

HPV-mw18c07

human papillomavirus mw18c11d

MF588733

HPV-mw18c11d

human papillomavirus mw18c134

MF588725

HPV-mw18c134

human papillomavirus mw18c25

MF588714

HPV-mw18c25

human papillomavirus mw18c39

MF588741

HPV-mw18c39

human papillomavirus mw20c01a

MF588701

HPV-mw20c01a

human papillomavirus mw20c01b

MF588708

HPV-mw20c01b

human papillomavirus mw20c02c

MF588702

HPV-mw20c02c

human papillomavirus mw20c03a

MF588715

HPV-mw20c03a

human papillomavirus mw20c04

MF588695

HPV-mw20c04

human papillomavirus mw20c08a

MF588742

HPV-mw20c08a

human papillomavirus mw20c09

MF588703

HPV-mw20c09

human papillomavirus mw20c10a

MF588726

HPV-mw20c10a

human papillomavirus mw21c693

MF588743

HPV-mw21c693

human papillomavirus mw22c09

MF588750

HPV-mw22c09

human papillomavirus mw23c08c

MF588690

HPV-mw23c08c

human papillomavirus mw23c101c

MF588711

HPV-mw23c101c

human papillomavirus mw23c77

MF588719

HPV-mw23c77

human papillomavirus mw27c04c

MF588728

HPV-mw27c04c

human papillomavirus mw27c157c

MF588692

HPV-mw27c157c

human papillomavirus mw27c39c

MF588712

HPV-mw27c39c

human papillomavirus mw27c52c

MF588691

HPV-mw27c52c

human papillomavirus mw34c04a

MF588693

HPV-mw34c04a

human papillomavirus mw34c11a

MF588720

HPV-mw34c11a

human papillomavirus mw34c14a

MF588694

HPV-mw34c14a

human papillomavirus mw34c28a

MF588751

HPV-mw34c28a

human papillomavirus mw34c34a

MF588731

HPV-mw34c34a

human papillomavirus mwg1c05

MF588756

HPV-mwg1c05

human papillomavirus mwg1c09

MF588727

HPV-mwg1c09
Virus names and virus abbreviations are not official ICTV designations.

 

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