Globuloviridae


Globuloviridae

Chapter contents

Posted July 2018

Globuloviridae: The family

Member taxa

Supporting information

  • Authors - corresponding authors: David Prangishvili (david.prangishvili@pasteur.fr) and Mart Krupovic (krupovic@pasteur.fr)
  • References

Citation 

A summary of this ICTV Report chapter has been published as an ICTV Virus Taxonomy Profile article in the Journal of General Virology, and should be cited when referencing this online chapter as follows:

Prangishvili, D., Krupovic, M., and ICTV Report Consortium, 2018, ICTV Virus Taxonomy Profile: Globuloviridae, Journal of General Virology, 99: 1357-1358.

Summary

The Globuloviridae is a family of enveloped viruses with linear, double-stranded DNA genomes of about 21–28 kbp. The virions are spherical with a diameter of 70–100 nm and carry a lipid-containing envelope and helical nucleoprotein core. No information is available about genome replication.  Globuloviruses infect members of the hyperthermophilic archaea belonging to genera Pyrobaculum and Thermoproteus, which thrive in extreme geothermal environments. Infection does not cause lysis of host cells. The viral genome does not integrate into the host chromosome.

Table 1.Globuloviridae. Characteristics of the family Globuloviridae.

Characteristic

Description

Typical member

Pyrobaculum spherical virus (AJ635161), species Pyrobaculum spherical virus, genus Globulovirus

Virion

Spherical, enveloped with a diameter of 70–100 nm

Genome

Linear, dsDNA genomes of about 21–28 kbp

Replication

Non-lytic, chronic infection

Translation

No information

Host range

Hyperthermophilic archaea from the genera Pyrobaculum and Thermoproteus

Taxonomy

One genus, two species

Virion

Morphology

Virions are spherical, 70–100 nm in diameter, with spherical protrusions that are about 15 nm in diameter (Figure 1.Globuloviridae). Virions carry a lipid-containing envelope that encases a superhelical core, consisting of linear dsDNA and nucleoproteins (Figure 1.Globuloviridae) (Ahn et al., 2006, Häring et al., 2004). The morphotype is unusual for dsDNA viruses (Prangishvili 2015, Prangishvili et al., 2017).

Figure 1.Globuloviridae. Negative-contrast electron micrographs of virions of Pyrobaculum spherical virus. (Left) Intact virions; arrows indicate spherical protrusions. (Right) Partially disrupted virions extruding disordered nucleoprotein core. The bars represent 100 nm. Modified from (Häring et al., 2004).

Physicochemical and physical properties

Virion buoyant density in sucrose is about 1.3 g cm−3. Virions are highly heat-stable. Prolonged exposure to oxygen does not affect the efficiency of infection.

Nucleic acid

Virions contain a single molecule of linear dsDNA, comprising 28,337 bp for Pyrobaculum spherical virus (PSV). 

Proteins

Virions contain three major structural protein with molecular masses of about 16 (VP1), 20 (VP2) and 33 (VP3) kDa (Ahn et al., 2006, Häring et al., 2004). About 80% of amino acids of the major structural protein VP3 are hydrophobic.

Lipids

Virion contains lipids selectively acquired from the pool of host lipids.

Carbohydrates

None reported.

Genome organization and replication

Virions contain a single molecule of linear dsDNA, comprising 28,337 bp for PSV and ~21.6 kbp for Thermoproteus tenax spherical virus 1 (TTSV1). The ends of the linear genome carry inverted repeats (190 bp for PSV), which contain multiple copies of 5 bp direct repeats. In the case of PSV, the two strands of the dsDNA genome appear to be covalently linked at the termini (Häring et al., 2004). PSV and TTSV1 genomes have 48 and 38 open reading frames (ORF), respectively, of which only 15 are shared between the two viruses. Several examples of gene duplication have been reported (Fig. 2). Almost all predicted genes are located on one DNA strand and do not show sequence similarity to genes in extant databases (Krupovic et al., 2018). High resolution structures have been solved for 5 proteins of PSV (Figure 2.Globuloviridae), shedding light on the potential functions of some of these proteins (Krupovic et al., 2012). ORF165a and its paralogs, ORF165b and ORF236, contain a winged helix-turn-helix domain and might have a DNA-binding capacity. Similarly, ORF126 and ORF107 contain a C4-type zinc-binding domain and might be involved in transcription regulation. Finally, ORF137 displays unexpected structural similarity to Sm-like RNA-binding proteins, such as bacterial Hfq, and might be involved in the metabolism of viral or host RNA molecules, as is the case for cellular Sm-like proteins. Globuloviruses do not encode identifiable genome replication proteins and are likely to recruit the host machinery for genome replication.

Figure 2.Globuloviridae. Genome organization of Pyrobaculum spherical virus showing location, sizes and direction of putative genes. Genes encoding the three major structural proteins, VP1-3, are shown in black. Paralogous genes are indicated with the same colors. The available protein X-ray structures are shown beneath the genome map and are shaded with distinct colours that follow the shading of their corresponding genes. The winged helix-turn-helix (wHTH) domain of ORF165a is circled (modified from (Krupovic et al., 2012)).

Antigenicity 

Not known

Biology

PSV infects hyperthermophilic archaea from the genera Pyrobaculum and Thermoproteus (Häring et al., 2004), whereas TTSV1 has been shown to replicate in a single strain of Thermoproteus (Ahn et al., 2006). The hosts are anaerobes thriving in extreme geothermal environments with temperatures around 85 °C, pH 6. Globuloviruses establish a chronic infection and are released from the host cells without causing lysis. The viral genome does not integrate into the host chromosome.

Derivation of names

Globulo: from Latin globulus, “small ball”.

Phylogenetic relationships

Viruses from the two species, Pyrobaculum spherical virus and Thermoproteus tenax spherical virus 1, share less than half of their genes (Ahn et al., 2006, Häring et al., 2004). Viruses from the two species in the genus differ in virion size, host range, and in the size and nucleotide sequence of the genome.

Similarity with other taxa

No relationships known.

 


Genus: Globulovirus


Since only one genus (Globulovirus) is currently recognized in the family Globuloviridae, the family description above corresponds to the genus description. For clarity, the additional information that can be found on the genus page is also presented below.

Species demarcation criteria

Viruses from the two species, Pyrobaculum spherical virus and Thermoproteus tenax spherical virus 1, share less than half of their genes (Ahn et al., 2006, Häring et al., 2004). Viruses from the two species in the genus differ in virion size, host range, and in the size and nucleotide sequence of the genome.

Member species

SpeciesVirus name(s)Exemplar isolateExemplar accession numberExemplar RefSeq numberAvailable sequenceOther isolatesOther isolate accession numbersVirus abbreviationIsolate abbreviation
Pyrobaculum spherical virusPyrobaculum spherical virusAJ635161NC_005872Complete genomePSV
Thermoproteus tenax spherical virus 1Thermoproteus tenax spherical virus 1AY722806NC_006556Complete genomeTTSV1

Virus names, the choice of exemplar isolates, and virus abbreviations, are not official ICTV designations.