8-Order of Presentation

Order of Presentation of Virus Taxonomic Descriptions

In this Report, chapters describing the major taxa are presented in groups. The first level of organization groups chapters according to genome composition and structure (dsDNA, ssDNA, etc.). The second level is according to taxonomic rank: first, order, including constituent families and their genera; second, family, including constituent genera; third, genus, if unassigned to a family. Within each group, chapters appear alphabetically. Finally, within a chapter, genera may be presented in order of priority or importance in the family and not necessarily alphabetically. The table below provides the order of presentation of each taxon within this Report.

At the end of each genus description is a list of species. The species names are in italic script. The names of representative isolates within a species follow the species name and are indented and in roman script. Isolate names are aligned with relevant accession numbers (between square brackets in the center column) and a recommended abbreviation (between parenthesis in the rightmost column). Some lists contain extra information such as details of vector and/or host. In some genera, species are clustered into groups or serogroups, while in others the isolates within a species are clustered. These clusters are not formal taxonomic groupings.

Order	Family	Subfamily	Genus	Type Species	Host
DNA Viruses
dsDNA Viruses
CAUDOVIRALES
	Myoviridae		“T4-like viruses”	Enterobacteria phage T4	B
			“P1-like viruses”	Enterobacteria phage P1	B
			“P2-like viruses”	Enterobacteria phage P2	B
			“Mu-like viruses”	Enterobacteria phage Mu	B
			“SPO1-like viruses”	Bacillus phage SPO1	B
			“PhiH-like viruses”	Halobacterium phage phiH	Ar
			“PhiKZ-like viruses”	Pseudomonas phage phiKZ	B
			“I3-like viruses”	Mycobacterium phage I3	B
	Podoviridae		“BPP-1-like viruses”	Bordetella phage BPP-1	B
			“Epsilon15-like viruses”	Salmonella phage epsilon15	B
			“LUZ24-like viruses”	Pseudomonas phage LUZ24	B
			“N4-like viruses”	Escherichia phage N4	B
			“P22-like viruses”	Enterobacteria phage P22	B
			“Phieco32-like viruses”	Enterobacteria phage Phieco32	B
		Autographivirinae	“PhiKMV-like viruses”	Pseudomonas phage phiKMV	B
			“SP6-like viruses”	Enterobacteria phage SP6	B
			“T7-like viruses”	Enterobacteria phage T7	B
		Picovirinae	“AHJD-like viruses”	Staphylococcus phage 44AHJD	B
			“Phi29-like viruses”	Bacillus phage phi29	B
	Siphoviridae		“Lambda-like viruses”	Enterobacteria phage lambda	B
			“T1-like viruses”	Enterobacteria phage T1	B
			“T5-like viruses”	Enterobacteria phage T5	B
			“L5-like viruses”	Mycobacterium phage L5	B
			“c2-like viruses”	Lactococcus phage c2	B
			“PsiM1-like viruses”	Methanobacterium phage psiM1	Ar
			“PhiC31-like viruses”	Streptomyces phage phiC31	B
			“N15-like viruses”	Enterobacteria phage N15	B
			“SPbeta-like viruses”	Bacillus phage SPbeta	B
HERPESVIRALES
	Alloherpesviridae		Batrachovirus	Ranid herpesvirus 1	V
			Cyprinivirus	Cyprinid herpesvirus 3	V
			Ictalurivirus	Ictalurid herpesvirus 1	V
			Salmonivirus	Salmonid herpesvirus 1	V
	Herpesviridae	Alphaherpesvirinae	Iltovirus	Gallid herpesvirus 1	V
			Mardivirus	Gallid herpesvirus 2	V
			Simplexvirus	Human herpesvirus 1	V
			Varicellovirus	Human herpesvirus 3	V
		Betaherpesvirinae	Cytomegalovirus	Human herpesvirus 5	V
			Muromegalovirus	Murid herpesvirus 1	V
			Proboscivirus	Elephantid herpesvirus 1	V
			Roseolovirus	Human herpesvirus 6	V
		Gammaherpesvirinae	Lymphocryptovirus	Human herpesvirus 4	V
			Macavirus	Alcelaphine herpesvirus 1	V
			Percavirus	Equid herpesvirus 2	V
			Rhadinovirus	Saimiriine herpesvirus 2	V
	Malacoherpesviridae		Ostreavirus	Ostreid herpesvirus 1	I
	Adenoviridae		Mastadenovirus	Human adenovirus C	V
			Aviadenovirus	Fowl adenovirus A	V
			Atadenovirus	Ovine adenovirus D	V
			Siadenovirus	Frog adenovirus	V
			Ichtadenovirus	Sturgeon adenovirus A	V
	Ampullaviridae		Ampullavirus	Acidianus bottle-shaped virus	Ar
	Ascoviridae		Ascovirus	Spodoptera frugiperda ascovirus 1a	I
	Asfarviridae		Asfivirus	African swine fever virus	V, I
	Baculoviridae		Alphabaculovirus	Autographa californica multiple nucleopolyhedrovirus	I
			Betabaculovirus	Cydia pomonella granulovirus	I
			Gammabaculovirus	Neodiprion lecontei nucleopolyhedrovirus	I
			Deltabaculovirus	Culex nigripalpus nucleopolyhedrovirus	I
	Bicaudaviridae		Bicaudavirus	Acidianus two-tailed virus	Ar
	Corticoviridae		Corticovirus	Pseudoalteromonas phage PM2	B
	Fuselloviridae		Fusellovirus	Sulfolobus spindle-shaped virus 1	Ar
	Globuloviridae		Globulovirus	Pyrobaculum spherical virus	Ar
	Guttaviridae		Guttavirus	Sulfolobus newzealandicus droplet-shaped virus	Ar
	Iridoviridae		Iridovirus	Invertebrate iridescent virus 6	I
			Chloriridovirus	Invertebrate iridescent virus 3	I
			Ranavirus	Frog virus 3	V
			Lymphocystivirus	Lymphocystis disease virus 1	V
			Megalocytivirus	Infectious spleen and kidney necrosis virus	V
	Lipothrixviridae		Alphalipothrixvirus	Thermoproteus tenax virus 1	Ar
			Betalipothrixvirus	Sulfolobus islandicus filamentous virus	Ar
			Gammalipothrixvirus	Acidianus filamentous virus 1	Ar
			Deltalipothrixvirus	Acidianus filamentous virus 2	Ar
	Mimiviridae		Mimivirus	Acanthamoeba polyphaga mimivirus	Pr
	Nimaviridae		Whispovirus	White spot syndrome virus	I
	Papillomaviridae		Alphapapillomavirus	Human papillomavirus 32	V
			Betapapillomavirus	Human papillomavirus 5	V
			Gammapapillomavirus	Human papillomavirus 4	V
			Deltapapillomavirus	European elk papillomavirus	V
			Epsilonpapillomavirus	Bovine papillomavirus 5	V
			Zetapapillomavirus	Equine papillomavirus 1	V
			Etapapillomavirus	Fringilla coelebs papillomavirus	V
			Thetapapillomavirus	Psittacus erithacus timneh papillomavirus	V
			Iotapapillomavirus	Mastomys natalensis papillomavirus	V
			Kappapapillomavirus	Cottontail rabbit papillomavirus	V
			Lambdapapillomavirus	Canine oral papillomavirus	V
			Mupapillomavirus	Human papillomavirus 1	V
			Nupapillomavirus	Human papillomavirus 41	V
			Xipapillomavirus	Bovine papillomavirus 3	V
			Omikronpapillomavirus	Phocoena spinipinnis papillomavirus	V
			Pipapillomavirus	Hamster oral papillomavirus	V
	Phycodnaviridae		Chlorovirus	Paramecium bursaria Chlorella virus 1	Al
			Coccolithovirus	Emiliania huxleyi virus 86	Al
			Prasinovirus	Micromonas pusilla virus SP1	Al
			Prymnesiovirus	Chrysochromulina brevifilum virus PW1	Al
			Phaeovirus	Ectocarpus siliculosus virus 1	Al
			Raphidovirus	Heterosigma akashiwo virus 01	Al
	Plasmaviridae		Plasmavirus	Acholeplasma phage L2	B
	Polydnaviridae		Bracovirus	Cotesia melanoscela bracovirus	I
			Ichnovirus	Campoletis sonorensis ichnovirus	I
		Polyomaviridae	Polyomavirus	Simian virus 40	V
	Poxviridae	Chordopoxvirinae	Avipoxvirus	Fowlpox virus	V
			Capripoxvirus	Sheeppox virus	V
			Cervidpoxvirus	Deerpox virus W-848-83	V
			Leporipoxvirus	Myxoma virus	V
			Molluscipoxvirus	Molluscum contagiosum virus	V
			Orthopoxvirus	Vaccinia virus	V
			Parapoxvirus	Orf virus	V
			Suipoxvirus	Swinepox virus	V
			Yatapoxvirus	Yaba monkey tumor virus	V
		Entomopoxvirinae	Alphaentomopoxvirus	Melolontha melolontha entomopoxvirus	I
			Betaentomopoxvirus	Amsacta moorei entomopoxvirus 'L'	I
			Gammaentomopoxvirus	Chironomus luridus entomopoxvirus	I
	Rudiviridae		Rudivirus	Sulfolobus islandicus rod-shaped virus 2	Ar
	Tectiviridae		Tectivirus	Enterobacteria phage PRD1	B
	Unassigned		Rhizidiovirus	Rhizidiomyces virus	Pr
			Salterprovirus	His 1 virus	Ar
ssDNA Viruses
	Anelloviridae		Alphatorquevirus	Torque teno virus 1	V
			Betatorquevirus	Torque teno mini virus 1	V
			Gammatorquevirus	Torque teno midi virus 1	V
			Deltatorquevirus	Torque teno tupaia virus	V
			Epsilontorquevirus	Torque teno tamarin virus	V
			Zetatorquevirus	Torque teno douroucouli virus	V
			Etatorquevirus	Torque teno felis virus	V
			Thetatorquevirus	Torque teno canis virus	V
			Iotatorquevirus	Torque teno sus virus 1	V
	Circoviridae		Circovirus	Porcine circovirus-1	V
			Gyrovirus	Chicken anemia virus	V
	Geminiviridae		Mastrevirus	Maize streak virus	P
			Curtovirus	Beet curly top virus	P
			Topocuvirus	Tomato pseudo-curly top virus	P
			Begomovirus	Bean golden yellow mosaic virus	P
	Inoviridae		Inovirus	Enterobacteria phage M13	B
			Plectrovirus	Acholeplasma phage MV-L51	B
	Microviridae		Microvirus	Enterobacteria phage phiX174	B
		Gokushovirinae	Chlamydiamicrovirus	Chlamydia phage 1	B
			Bdellomicrovirus	Bdellovibrio phage MAC 1	B
			Spiromicrovirus	Spiroplasma phage 4	B
	Nanoviridae		Nanovirus	Subterranean clover stunt virus	P
			Babuvirus	Banana bunchy top virus	P
	Parvoviridae	Parvovirinae	Parvovirus	Minute virus of mice	V
			Erythrovirus	Human parvovirus B19	V
			Dependovirus	Adeno-associated virus-2	V
			Amdovirus	Aleutian mink disease virus	V
			Bocavirus	Bovine parvovirus	V
		Densovirinae	Iteravirus	Bombyx mori densovirus	I
			Brevidensovirus	Aedes aegypti densovirus	I
			Densovirus	Junonia coenia densovirus	I
			Pefudensovirus	Periplaneta fuliginosa densovirus	I
Reverse Transcribing DNA and RNA Viruses
	Caulimoviridae		Caulimovirus	Cauliflower mosaic virus	P
			Petuvirus	Petunia vein clearing virus	P
			Soymovirus	Soybean chlorotic mottle virus	P
			Cavemovirus	Cassava vein mosaic virus	P
			Badnavirus	Commelina yellow mottle virus	P
			Tungrovirus	Rice tungro bacilliform virus	P
	Hepadnaviridae		Orthohepadnavirus	Hepatitis B virus	V
			Avihepadnavirus	Duck hepatitis B virus	V
	Metaviridae		Metavirus	Saccharomyces cerevisiae Ty3 virus	F, I, P, V
			Errantivirus	Drosophila melanogaster Gypsy virus	I
			Semotivirus	Ascaris lumbricoides Tas virus	I, V
	Pseudoviridae		Pseudovirus	Saccharomyces cerevisiae Ty1 virus	F, P
			Hemivirus	Drosophila melanogaster copia virus	Al, F, I
			Sirevirus	Glycine max SIRE1 virus	P
	Retroviridae	Orthoretrovirinae	Alpharetrovirus	Avian leukosis virus	V
			Betaretrovirus	Mouse mammary tumor virus	V
			Gammaretrovirus	Murine leukemia virus	V
			Deltaretrovirus	Bovine leukemia virus	V
			Epsilonretrovirus	Walleye dermal sarcoma virus	V
			Lentivirus	Human immunodeficiency virus 1	V
		Spumaretrovirinae	Spumavirus	Simian foamy virus	V
RNA Viruses
dsRNA Viruses
	Birnaviridae		Aquabirnavirus	Infectious pancreatic necrosis virus	V, I
			Avibirnavirus	Infectious bursal disease virus	V
			Blosnavirus	Blotched snakehead virus	V
			Entomobirnavirus	Drosophila X virus	I
	Chrysoviridae		Chrysovirus	Penicillium chrysogenum virus	F
	Cystoviridae		Cystovirus	Pseudomonas phage phi6	B
	Endornaviridae		Endornavirus	Vicia faba endornavirus	Al, F, P
	Partitiviridae		Partitivirus	Atkinsonella hypoxylon virus	F
			Alphacryptovirus	White clover cryptic virus 1	P
			Betacryptovirus	White clover cryptic virus 2	P
			Cryspovirus	Cryptosporidium parvum virus 1	Pr
	Picobirnaviridae		Picobirnavirus	Human picobirnavirus	V
	Reoviridae	Spinareovirinae	Orthoreovirus	Mammalian orthoreovirus	V
			Aquareovirus	Aquareovirus A	I, V
			Oryzavirus	Rice ragged stunt virus	I, P
			Fijivirus	Fiji disease virus	I, P
			Mycoreovirus	Mycoreovirus 1	F
			Cypovirus	Cypovirus 1	I
			Idnoreovirus	Idnoreovirus 1	I
			Dinovernavirus	Aedes pseudoscutellaris reovirus	I
			Coltivirus	Colorado tick fever virus	I, V
		Sedoreovirinae	Orbivirus	Bluetongue virus	I, V
			Rotavirus	Rotavirus A	V
			Seadornavirus	Banna virus	I, V
			Phytoreovirus	Wound tumor virus	I, P
			Cardoreovirus	Eriocheir sinensis reovirus	I
			Mimoreovirus	Micromonas pusilla reovirus	Pr
	Totiviridae		Totivirus	Saccharomyces cerevisiae virus L-A	F
			Victorivirus	Helminthosporium victoriae virus 190S	F
			Giardiavirus	Giardia lamblia virus	Pr
			Leishmaniavirus	Leishmania RNA virus 1 - 1	Pr
Negative Sense ssRNA Viruses
MONONEGAVIRALES
	Bornaviridae		Bornavirus	Borna disease virus	V
	Filoviridae		Marburgvirus	Lake Victoria marburgvirus	V
			Ebolavirus	Zaire ebolavirus	V
	Paramyxoviridae	Paramyxovirinae	Rubulavirus	Mumps virus	V
			Avulavirus	Newcastle disease virus	V
			Respirovirus	Sendai virus	V
			Henipavirus	Hendra virus	V
			Morbillivirus	Measles virus	V
		Pneumovirinae	Pneumovirus	Human respiratory syncytial virus	V
			Metapneumovirus	Avian metapneumovirus	V
	Rhabdoviridae		Vesiculovirus	Vesicular stomatitis Indiana virus	V, I
			Lyssavirus	Rabies virus	V
			Ephemerovirus	Bovine ephemeral fever virus	V, I
			Novirhabdovirus	Infectious hematopoietic necrosis virus	V
			Cytorhabdovirus	Lettuce necrotic yellows virus	I, P
			Nucleorhabdovirus	Potato yellow dwarf virus	I, P
	Arenaviridae		Arenavirus	Lymphocytic choriomeningitis virus	V
	Bunyaviridae		Orthobunyavirus	Bunyamwera virus	V, I
			Hantavirus	Hantaan virus	V, I
			Nairovirus	Dugbe virus	V, I
			Phlebovirus	Rift Valley fever virus	V, I
			Tospovirus	Tomato spotted wilt virus	I, P
	Ophioviridae		Ophiovirus	Citrus psorosis virus	P
	Orthomyxoviridae		Influenzavirus A	Influenza A virus	V
			Influenzavirus B	Influenza B virus	V
			Influenzavirus C	Influenza C virus	V
			Thogotovirus	Thogoto virus	V, I
			Isavirus	Infectious salmon anemia virus	V
	Unassigned		Deltavirus	Hepatitis delta virus	V
			Emaravirus	European mountain ash ringspot-associated virus	P
			Tenuivirus	Rice stripe virus	P, I
			Varicosavirus	Lettuce big-vein associated virus	P
Positive Sense ssRNA Viruses
NIDOVIRALES
	Arteriviridae		Arterivirus	Equine arteritis virus	V
	Coronaviridae	Coronavirinae	Alphacoronavirus	Alphacoronavirus 1	V
			Betacoronavirus	Murine coronavirus	V
			Gammacoronavirus	Avian coronavirus	V
		Torovirinae	Torovirus	Equine torovirus	V
			Bafinivirus	White bream virus	V
	Roniviridae		Okavirus	Gill-associated virus	I
PICORNAVIRALES
	Dicistroviridae		Cripavirus	Cricket paralysis virus	I
			Aparavirus	Acute bee paralysis virus	I
	Iflaviridae		Iflavirus	Infectious flacherie virus	I
	Marnaviridae		Marnavirus	Heterosigma akashiwo RNA virus	Al
	Picornaviridae		Enterovirus	Human enterovirus C	V
			Cardiovirus	Encephalomyocarditis virus	V
			Aphthovirus	Foot-and-mouth disease virus	V
			Hepatovirus	Hepatitis A virus	V
			Parechovirus	Human parechovirus	V
			Erbovirus	Equine rhinitis B virus	V
			Kobuvirus	Aichi virus	V
			Teschovirus	Porcine teschovirus	V
			Sapelovirus	Porcine sapelovirus	V
			Senecavirus	Seneca Valley virus	V
			Tremovirus	Avian encephalomyelitis virus	V
			Avihepatovirus	Duck hepatitis A virus	V
	Secoviridae	Comovirinae	Comovirus	Cowpea mosaic virus	P
			Fabavirus	Broad bean wilt virus 1	P
			Nepovirus	Tobacco ringspot virus	P
		Unassigned	Cheravirus	Cherry rasp leaf virus	P
			Sadwavirus	Satsuma dwarf virus	P
			Torradovirus	Tomato torrado virus	P
			Sequivirus	Parsnip yellow fleck virus	P
			Waikavirus	Rice tungro spherical virus	P
TYMOVIRALES
	Alphaflexiviridae		Allexivirus	Shallot virus X	P
			Botrexvirus	Botrytis virus X	F
			Lolavirus	Lolium latent virus	P
			Mandarivirus	Indian citrus ringspot virus	P
			Potexvirus	Potato virus X	P
			Sclerodarnavirus	Sclerotinia sclerotiorum debilitation-associated RNA virus	F
	Betaflexiviridae		Capillovirus	Apple stem grooving virus	P
			Carlavirus	Carnation latent virus	P
			Citrivirus	Citrus leaf blotch virus	P
			Foveavirus	Apple stem pitting virus	P
			Trichovirus	Apple chlorotic leaf spot virus	P
			Vitivirus	Grapevine virus A	P
	Gammaflexiviridae		Mycoflexivirus	Botrytis virus F	F
	Tymoviridae		Tymovirus	Turnip yellow mosaic virus	P
			Marafivirus	Maize rayado fino virus	P, I
			Maculavirus	Grapevine fleck virus	P
	Astroviridae		Avastrovirus	Turkey astrovirus	V
			Mamastrovirus	Human astrovirus	V
	Barnaviridae		Barnavirus	Mushroom bacilliform virus	F
	Bromoviridae		Alfamovirus	Alfalfa mosaic virus	P
			Anulavirus	Pelargonium zonate spot virus	P
			Bromovirus	Brome mosaic virus	P
			Cucumovirus	Cucumber mosaic virus	P
			Ilarvirus	Tobacco streak virus	P
			Oleavirus	Olive latent virus 2	P
	Caliciviridae		Vesivirus	Vesicular exanthema of swine virus	V
			Lagovirus	Rabbit hemorrhagic disease virus	V
			Norovirus	Norwalk virus	V
			Sapovirus	Sapporo virus	V
			Nebovirus	Newbury-1 virus	V
	Closteroviridae		Closterovirus	Beet yellows virus	P
			Ampelovirus	Grapevine leafroll-associated virus 3	P
			Crinivirus	Lettuce infectious yellows virus	P
	Flaviviridae		Flavivirus	Yellow fever virus	V, I
			Pestivirus	Bovine viral diarrhea virus 1	V
			Hepacivirus	Hepatitis C virus	V
	Hepeviridae		Hepevirus	Hepatitis E virus	V
	Hypoviridae		Hypovirus	Cryphonectria hypovirus 1	F
	Leviviridae		Levivirus	Enterobacteria phage MS2	B
			Allolevivirus	Enterobacteria phage Qbeta	B
	Luteoviridae		Luteovirus	Barley yellow dwarf virus-PAV	P
			Polerovirus	Potato leafroll virus	P
			Enamovirus	Pea enation mosaic virus-1	P
	Narnaviridae		Narnavirus	Saccharomyces 20S RNA narnavirus	F
			Mitovirus	Cryphonectria mitovirus 1	F
	Nodaviridae		Alphanodavirus	Nodamura virus	I
			Betanodavirus	Striped jack nervous necrosis virus	V
	Potyviridae		Potyvirus	Potato virus Y	P
			Brambyvirus	Blackberry virus Y	P
			Ipomovirus	Sweet potato mild mottle virus	P
			Macluravirus	Maclura mosaic virus	P
			Rymovirus	Ryegrass mosaic virus	P
			Tritimovirus	Wheat streak mosaic virus	P
			Bymovirus	Barley yellow mosaic virus	P
	Tetraviridae		Betatetravirus	Nudaurelia capensis beta virus	I
			Omegatetravirus	Nudaurelia capensis omega virus	I
	Togaviridae		Alphavirus	Sindbis virus	V, I
			Rubivirus	Rubella virus	V
	Tombusviridae		Tombusvirus	Tomato bushy stunt virus	P
			Dianthovirus	Carnation ringspot virus	P
			Aureusvirus	Pothos latent virus	P
			Avenavirus	Oat chlorotic stunt virus	P
			Carmovirus	Carnation mottle virus	P
			Necrovirus	Tobacco necrosis virus A	P
			Panicovirus	Panicum mosaic virus	P
			Machlomovirus	Maize chlorotic mottle virus	P
	Virgaviridae		Furovirus	Soil-borne wheat mosaic virus	P
			Hordeivirus	Barley stripe mosaic virus	P
			Pecluvirus	Peanut clump virus	P
			Pomovirus	Potato mop-top virus	P
			Tobamovirus	Tobacco mosaic virus	P
			Tobravirus	Tobacco rattle virus	P
	Unassigned		Benyvirus	Beet necrotic yellow vein virus	P
			Cilevirus	Citrus leprosis virus C	P
			Idaeovirus	Raspberry bushy dwarf virus	P
			Ourmiavirus	Ourmia melon virus	P
			Polemovirus	Poinsettia latent virus	P
			Sobemovirus	Southern bean mosaic virus	P
			Umbravirus	Carrot mottle virus	P
Unassigned Viruses
	Unassigned Archaeal Viruses				Ar
	Unassigned Bacterial Viruses				B
	Unassigned Fungal Viruses				F
	Unassigned Invertebrate Viruses				I
	Unassigned Plant Viruses				P
	Unassigned Vertebrate Viruses				V
Subviral Agents
Satellites and other virus-dependent nucleic acids					F,I,P,Pr,V
Viroids	Avsunviroidae		Avsunviroid	Avocado sunblotch viroid	P
			Pelamoviroid	Peach latent mosaic viroid	P
			Elaviroid	Eggplant latent viroid	P
			Cocadviroid	Coconut cadang-cadang viroid	P
			Apscaviroid	Apple scar skin viroid	P
			Coleviroid	Coleus blumei viroid 1	P
Prions	Fungal Prions				F
	Vertebrate Prions				V

Abbreviations of the virus hosts: Algae, Al; Archaea, Ar; Bacteria, B; Fungi, F; Invertebrates, I; Plants, P; Protozoa, Pr; Vertebrates, V.